Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq15 91.5 1e-13 seq4 91.5 1e-13 seq3 87.8 1e-12 seq17 86.0 5e-12 >seq15 Length=171247636 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || || | ||| | ||||| ||| |||||| || | ||||| || | | Sbjct 26151853 CCTCCTCTAAGCCTGAGCACAAGATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCC 26151912 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| |||| || | ||||| |||||||| || | | ||| || || | || Sbjct 26151913 AAAGTACGGCCGTCTTCAAGCTGTTTACCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGG 26151972 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||||| || |||| || | ||||| || ||| ||| || | ||| || Sbjct 26151973 ATGCCTTCTTTGTC-CTGAATCTTGGCCTTGACATTGTCAATTGTATCAGAACTCTCAAC 26152031 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || || || ||||| ||||||||||| ||||| |||||| Sbjct 26152032 TTCAAGAGTGATGGTCTTGCCGGTAAGAGTTTTCACGAAAATCTGCATT 26152080 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 |||||| || | ||||| || | ||| ||||| |||| || | ||||| |||||||| Sbjct 34230923 CTCCTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCGTCTTCAAGCTGTTTACCGGCAAA 34230864 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTC 43036 || | | ||| || || | || | |||||||| || |||| || | ||||| Sbjct 34230863 GATAAGCCTCTGCTGGTCTGGTGGGATCCCTTCTTTGTC-CTGAATCTTGGCCTTGACAT 34230805 Query 43037 TGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096 || ||| ||| || | |||||| || | || || || || ||||||| |||||||| Sbjct 34230804 TGTCAATTGTATCAGAACTCTCGACCTCAAGAGTGATGGTCTTCCCGGTTAAAGTTTTCA 34230745 Query 43097 CAAAAATTTGCATT 43110 | |||||||||||| Sbjct 34230744 CGAAAATTTGCATT 34230731 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||||||||| | ||||| |||| || ||||| |||| || | || || ||||| || Sbjct 26152116 CTCCTTTTGGATGTTGTAGTCGGCTAAGGTACGGCCGTCTTCAAGCTGCTTTCCGGCGAA 26152175 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 ||||||| || || || | || | || || || || |||| | || || | Sbjct 26152176 GATCAATCTTTGCTGGTCTGGAGGGATCCCCTCCTTGTCTTGGATCTTGGCCTTAACGTT 26152235 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | | ||| ||| | ||| || || | || || || |||||||||| ||||||||| Sbjct 26152236 GTCGATTGTATCGGAACTCTCTACCTCAAGGGTGATGGTCTTTCCGGTTAAAGTTTTCAC 26152295 Query 43098 AAAAATTTGCAT 43109 |||||||||||| Sbjct 26152296 AAAAATTTGCAT 26152307 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||||||||| | ||||| |||| || ||||| |||| || | || || |||||||| Sbjct 34230695 CTCCTTTTGGATGTTGTAGTCGGCTAAGGTACGGCCGTCTTCAAGCTGCTTTCCGGCAAA 34230636 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 ||||||| || || || | || | || || || || |||| | || || | Sbjct 34230635 GATCAATCTTTGCTGGTCTGGAGGGATCCCCTCCTTGTCTTGGATCTTGGCCTTAACATT 34230576 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | ||| ||| || | |||||| || | || || || |||||||||| ||||||||| Sbjct 34230575 GTCAATTGTATCAGAACTCTCGACCTCGAGAGTGATGGTCTTTCCGGTTAAAGTTTTCAC 34230516 Query 43098 AAAAATTTGCAT 43109 ||| || ||||| Sbjct 34230515 AAAGATCTGCAT 34230504 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || || | ||| | ||||| ||| |||||| || | ||||| |||| Sbjct 34348589 CCTCCTCTAAGCCTGAGCACAAGATGGAGTGTGGACTCCTTCTGAATGTTGTAGTCGGCT 34348530 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || || | ||||| |||||||| ||||||||||| || || | || Sbjct 34348529 AAAGTACGGCCATCTTCAAGCTGTTTACCGGCAAAGATCAATCGCTGCTGGTCAGGTGGG 34348470 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | || ||||| || |||| | ||||| | ||| ||||| ||| || || Sbjct 34348469 ATGCCCTCTTTATCTTGGATCTTAGCCTTGACATTATCAATGGTGTC-TGAGCTTTCAAC 34348411 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || |||||||||| ||| || ||||| || ||||| Sbjct 34348410 TTCCAAAGTGATTGTCTTTCCGGTTAAAGTCTTAACAAAGATCTGCAT 34348363 >seq4 Length=178899001 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 42907 TGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGT 42966 |||| ||| |||||| || | ||||| || | ||| ||||| |||| |||||||| Sbjct 81196797 TGGAGAGTTGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTACGGCCGTCTTCCAATTGC 81196856 Query 42967 TTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAAC 43026 || || ||||| ||||||||||| || || | || | ||||| || || |||| Sbjct 81196857 TTTCCAGCAAAGATCAATCGCTGCTGGTCAGGGGGAATCCCTTCCTTGTCTTGGATCTTA 81196916 Query 43027 TCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTT 43086 | ||||| || | | |||||| | |||||| || | || || || || || || Sbjct 81196917 GCCTTGACGTTGTCGATGGTGTCGGAACTCTCGACCTCGAGAGTGATGGTCTTACCAGTG 81196976 Query 43087 AGAGTTTTCACAAAAATTTGCAT 43109 ||||| || || || |||||||| Sbjct 81196977 AGAGTCTTAACGAAGATTTGCAT 81196999 >seq3 Length=168485022 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | |||||||||| | || | | || || | ||||| ||||| || Sbjct 118895889 TCTTTTTGGATGTTGTAATCGGCTAGGGTTCTGCCCTCTTCGAGCTGTTTTCCGGCGAAG 118895948 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 || | || |||||||| | || | |||||||| || |||| ||||||| || Sbjct 118895949 ATGAGACGTTGTTGATCCGGTGGGATTCCTTCTTTGTCTTGGATCTTGGCTTTGACGTTG 118896008 Query 43039 CCAACTGTGTCGCCAGCCT-CGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | ||||||| ||| | |||| |||| || || |||||||||||||| ||||| || Sbjct 118896009 TCGATTGTGTCGG-AGCTTTCGACTTCTAGAGTGATTGTTTTTCCGGTTAGGGTTTTGAC 118896067 Query 43098 AAAAATTTGCATTTT 43112 ||| || ||||| || Sbjct 118896068 AAAGATCTGCATGTT 118896082 >seq17 Length=214723238 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | |||||||||||||| || |||||| || | ||||| || | Sbjct 210026222 CCACCACGGAGCCGTAACACCAAATGGAGCGTTGACTCCTTCTGGATGTTGTAGTCCGCT 210026281 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | |||| || | ||||| ||||| || || | ||||| || || | || Sbjct 210026282 AGGGTTCTGCCGTCTTCGAGCTGTTTTCCGGCGAAGATGAGCCGCTGCTGGTCCGGTGGG 210026341 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| | || || || | | ||||||| | ||||| Sbjct 210026342 ATGCCTTCTTTGTCTTGGATCTTGGCCTTCACGTTGTCGATTGTGTCGGAGGATTCGACC 210026401 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | |||||| || || || ||||| |||||||| || || ||||| || Sbjct 210026402 TCCAACGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 210026451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381362497944624