Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 1e-15 seq1 93.3 4e-14 seq4 91.5 1e-13 seq12 89.7 5e-13 seq11 82.4 8e-11 >seq3 Length=168485022 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| | |||| || ||||||||||| |||||||||||| Sbjct 118895853 CCGCCGCGGAGACGAAGAACGAGGTGAAGGGTGGATTCTTTTTGGATGTTGTAATCGGCT 118895912 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || |||||||| ||||| || || |||| |||||||| ||||| || || Sbjct 118895913 AGGGTTCTGCCCTCTTCGAGCTGTTTTCCGGCGAAGATGAGACGTTGTTGATCCGGTGGG 118895972 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| || || ||| | | || | ||||| | | ||| ||| Sbjct 118895973 ATTCCTTCTTTGTCTTGGATCTTGGCTTTGACGTTGTCGATTGTGTCGGAGCTTTCGACT 118896032 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | || || ||||| | ||||| || || || ||||| Sbjct 118896033 TCTAGAGTGATTGTTTTTCCGGTTAGGGTTTTGACAAAGATCTGCAT 118896079 >seq1 Length=153905722 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | || | ||||| || || || || || ||||||||||| | Sbjct 17864572 CCTCCACGGAGACGGAGGACCAGATGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGCC 17864513 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||||||||| || || || ||||||| | ||||| || || || Sbjct 17864512 AAGGTTCTGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGTGGA 17864453 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||||| ||| | | || | | |||| | |||||| Sbjct 17864452 ATACCTTCTTTGTCTTGGATTTTAGCTTTGACATTGTCGATCATGTCAGAACTCTCTACT 17864393 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 |||| ||| | ||||| ||||| | ||||| || || || |||||| || Sbjct 17864392 TCAAGAGTGATTGTCTTTCCGGTGAGCGTTTTAACAAAGATCTGCATACCT 17864342 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || ||||| | |||||| || || || |||||||| ||| Sbjct 17864800 CCACCACGGAGACGGAGGACCAAATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGGCT 17864741 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || |||||| || || || || ||| |||||| | ||||| || || || Sbjct 17864740 AGGGTTCTGCCGTCTTCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGG 17864681 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| || || || || ||| ||| | | || | ||||| | ||| || Sbjct 17864680 ATGCCCTCCTTATCCTGGATCTTTGCTTTGACATTGTCAATGGTGTCGGAACTTTCAACC 17864621 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | ||| | |||||||||||||||||| || || || || |||||| || Sbjct 17864620 TCCAAAGTGATCGTCTTGCCGGTCAATGTCTTCACAAAGATCTGCATACCT 17864570 >seq4 Length=178899001 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || ||||| |||||||||||| || |||| |||||| | ||| ||||| Sbjct 81196119 GTTGACTCCTTTTGGATGTTGTAATCGGCCAAGGTGCGGCCGTCTTCCAATTGCTTACCG 81196178 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||||||||| ||||| || || || || || || ||||| ||| ||| ||| Sbjct 81196179 GCGAAGATCAGACGCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGAATCTTTGCTTTG 81196238 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | || || | | ||| || |||| || | ||||| || ||||| || Sbjct 81196239 ACGTTATCGATGGTATCGGAGCTTTCGACCTCAAGGGTGATGGTCTTACCAGTCAAAGTC 81196298 Query 143168 TTTACGAATATTTGCATA 143185 || || || ||||||||| Sbjct 81196299 TTCACAAAGATTTGCATA 81196316 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| ||||||| || || || ||||| |||||||||||| Sbjct 81196317 CCACCACGAAGACGGAGAACCAAATGAAGAGTTGACTCCTTTTGAATGTTGTAATCGGCA 81196376 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||| || | || |||||||| |||||| | || || || || || Sbjct 81196377 AGAGTCCTGCCGTCCTCCAACTGCTTACCAGCGAAGATCAATCTCTGTTGGTCTGGTGGG 81196436 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| || || || | | || | ||||| | | ||| || Sbjct 81196437 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTATCGATGGTGTCGGAGCTTTCGACC 81196496 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| || | |||||||||||| | ||||| ||||| ||||||||| Sbjct 81196497 TCAAGGGTAATCGTCTTGCCGGTTAGGGTTTTGACGAAGATTTGCATA 81196544 >seq12 Length=166489593 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAAT-CGCTCATTGTGCTCGA 143028 ||||| || | ||| | || || || || || |||||||||| |||| | || || Sbjct 157664027 CGCAACACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAATCCGCT-AGGGTTCTGCC 157664085 Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 ||||||||| ||||| || || | || || |||||||| || || || |||||||| || Sbjct 157664086 GTCTTCGAGCTGTTTTCCGGCGAAAATTAGCCGTTGCTGGTCCGGTGGAATGCCTTCCTT 157664145 Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 ||| || ||| || | | || | |||||| | || ||| || || | || | Sbjct 157664146 GTCCTGGATCTTTGCCTTCACGTTGTCGATCGTGTCGGAGGATTCGACCTCCAACGTGAT 157664205 Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||| || || | ||||| ||||| || ||||| Sbjct 157664206 CGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 157664241 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGTCTTC 143034 || ||||| | || || || || || |||||||| || ||| | || || ||| || Sbjct 69697770 ACCAAATGGAGCGTTGACTCCTTCTGGATGTTGTAGTCCGCT-AGGGTTCTGCCGTCCTC 69697828 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 || ||||| || || |||| || ||||| || || || || |||||||||||||| Sbjct 69697829 CAGCTGTTTTCCGGCGAAGATGAGGCGTTGTTGGTCCGGTGGGATGCCTTCTTTGTCTTG 69697888 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 ||||| |||| | || | ||||| | || ||| || || | || | || || Sbjct 69697889 GATTTTGGACTTTACGTTGTCGATTGTGTCTGAGGATTCGACCTCTAGGGTTATTGTTTT 69697948 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| || || ||||||||||| || ||||| Sbjct 69697949 GCCCGTTAAGGTTTTTACGAAGATCTGCAT 69697978 >seq11 Length=168460249 Score = 82.4 bits (90), Expect = 8e-11 Identities = 140/199 (70%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 142987 TGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACC 143046 |||||| ||||| || ||||||||||| || || | |||||| |||||||| || Sbjct 109472027 TGTAGACTCTTTCTGGATGTTGTAATCAGACAAAGTACGACTGTCTTCAAGTTGTTTCCC 109472086 Query 143047 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106 ||| |||| || ||||| || || || || || || || ||||| ||| || || Sbjct 109472087 TGCAAAGATTAGCCGTTGTTGGTCCGGTGGGATCCCCTCCTTGTCTTGAATCTTAGCCTT 109472146 Query 143107 TA-GCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATG 143165 | | |||| | ||||||| || || || | ||| | |||||| ||||||| | Sbjct 109472147 CACGTTGTT-GATTGTGTCCGAACTCTCGACCTCTAGAGTAATCGTCTT-TCGGTCAAGG 109472204 Query 143166 TTTTTACGAATATTTGCAT 143184 | || |||||||| ||||| Sbjct 109472205 TCTTGACGAATATCTGCAT 109472223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507004716024960