Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq4 122 7e-23 seq15 96.9 3e-15 seq12 86.0 5e-12 seq16 82.4 6e-11 >seq4 Length=178899001 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| | || ||| ||||||| |||| || ||||||||||| || ||||||||||| Sbjct 81195861 CCTCCCCTCAGCCTCAACACCAGATGCAGAGTCGACTCCTTTTGGATGTTGTAATCCGCA 81195920 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || || |||| |||| ||||||||||||| | || || |||||||| ||| || Sbjct 81195921 AGAGTCCTGCCGTCTTCCAACTGTTTACCCGCAAAGATGAGCCTCTGCTGGTCCGGTGGG 81195980 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||| ||||| || || ||| || | | ||| ||| ||| ||| Sbjct 81195981 ATACCCTCCTTGTCCTGGATCTTTGCTTTCACGTTGTCGATAGTGTCGGAGCTCTCGACC 81196040 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| ||||| ||||| || || || || ||||| |||||||| Sbjct 81196041 TCCAAGGTGATGGTCTTACCGGTCAAGGTCTTAACAAAGATTTGCAT 81196087 >seq15 Length=171247636 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| | || ||| | ||| | ||| | || |||||||| ||||| ||||| || || Sbjct 34348361 CCTCCCCTCAGCCTGAGCACAAGGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAGCT 34348302 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | |||| || ||||||||||| ||| | ||||| |||||||| || || Sbjct 34348301 AATGTACGGCCGTCTTCAAGCTGTTTACCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGG 34348242 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || |||||||| ||| || ||||| | | | | ||||| | ||| | Sbjct 34348241 ATCCCTTCTTTGTCCTGAATCTTAGCCTTTACATTGTCAATTGTATCAGAACTCTCAACT 34348182 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | || ||||| || || || | |||||| || ||||| |||||| Sbjct 34348181 TCAAGAGTGATGGTCTTGCCAGTAAGAGTTTTCACGAAAATCTGCATT 34348134 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| | ||| | ||| | || | ||| |||||||| || || ||||| || ||| Sbjct 26151853 CCTCCTCTAAGCCTGAGCACAAGATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCC 26151912 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | |||| || ||||||||||| ||| | ||||| |||||||| || || Sbjct 26151913 AAAGTACGGCCGTCTTCAAGCTGTTTACCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGG 26151972 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||| |||||||| ||| || || || | | | | ||||| | ||| | Sbjct 26151973 ATGCCTTCTTTGTCCTGAATCTTGGCCTTGACATTGTCAATTGTATCAGAACTCTCAACT 26152032 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | || ||||| || || || | |||||| || ||||| |||||| Sbjct 26152033 TCAAGAGTGATGGTCTTGCCGGTAAGAGTTTTCACGAAAATCTGCATT 26152080 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || | || ||| | ||| | ||| | || |||||||| || || ||||| || ||| Sbjct 34230958 CCACCCCTCAGCCTGAGCACAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCAGCC 34230899 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | |||| || ||||||||||| ||| | ||||| |||||||| || || Sbjct 34230898 AAAGTACGGCCGTCTTCAAGCTGTTTACCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGG 34230839 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || |||||||| ||| || || || | | | | ||||| | ||| Sbjct 34230838 ATCCCTTCTTTGTCCTGAATCTTGGCCTTGACATTGTCAATTGTATCAGAACTCTCGACC 34230779 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | || ||||| || || ||||||||||| || |||||||||||| Sbjct 34230778 TCAAGAGTGATGGTCTTCCCGGTTAAAGTTTTCACGAAAATTTGCATT 34230731 >seq12 Length=166489593 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| || | ||| |||||||| || || ||||| ||||| | ||| || |||||||| Sbjct 69697770 ACCAAATGGAGCGTTGACTCCTTCTGGATGTTGTAGTCCGCTAGGGTTCTGCCGTCCTCC 69697829 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 |||||||| || || | || || | || || ||| || | ||| |||||||| Sbjct 69697830 AGCTGTTTTCCGGCGAAGATGAGGCGTTGTTGGTCCGGTGGGATGCCTTCTTTGTCTTGG 69697889 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG-TTTCGACGGTAATGGTTTT 19011 ||||| ||||| | | ||| || || ||| | || || | ||| || ||||| Sbjct 69697890 ATTTTGGACTTTACGTTGTCGATTGTGTC-TGAGGATTCGACCTCTAGGGTTATTGTTTT 69697948 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || ||||| ||||| || || || |||||| Sbjct 69697949 GCCCGTTAAGGTTTTTACGAAGATCTGCATT 69697979 >seq16 Length=188620566 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 ||||| ||||||||||| |||||||| ||| ||| || || | | || |||| ||| Sbjct 146055190 TGCAAAGTAGACTCCTTCTGAATATTATAAACCGGCAAAGTCCTCCCATCTTCCAACTGC 146055131 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || ||| ||||||| ||||| |||||| || | || ||||| || || || Sbjct 146055130 TTCCCAGCAAAAATAAGCCTCTGTTGATCCGGTGGAATACCTTCTTTATCCTAAAACTTA 146055071 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 ||| || | ||| ||| || | ||| || | |||||||| || || ||| Sbjct 146055070 GCTTTGACGTTATCGATAGTGTCAGAACTCTCGACCTCTAACGTAATGGTCTTGCCGGTT 146055011 Query 19019 AAAGTTTTGACAAAAATTTG 19038 || |||||||| || || || Sbjct 146055010 AAGGTTTTGACGAAGATCTG 146054991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414565079618032