Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq12 87.8 1e-12 >seq12 Length=166489593 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/226 (69%), Gaps = 14/226 (6%) Strand=Plus/Plus Query 33154 CCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTT- 33212 ||||||||||| ||||| |||||||| || || || |||||||| | | | ||| Sbjct 157664026 CCGCAACACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAATCCG----CTAGGGTTC 157664081 Query 33213 ---GGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTT 33269 ||| || | || ||||| || |||| ||||||||||||| || ||||||| Sbjct 157664082 TGCCGTCTTCGAGCTGTTTTCCGGCGAAAATTAGCCGTTGCTGGTCCGGTGGAATGCCTT 157664141 Query 33270 CTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCA 33326 | || || | | | ||| || || | | ||||||||| || || || |||| Sbjct 157664142 CCTTGTCCTGGATCTTTGCC---TTCACGTTGTCGATCGTGTCGGAGGATTCGACCTCCA 157664198 Query 33327 GAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || ||||| || ||||| || ||||| ||||| || ||||| || Sbjct 157664199 ACGTGATCGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATTTT 157664244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318771663564144