Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq11 109 4e-19 seq15 98.7 7e-16 seq1 98.7 7e-16 >seq11 Length=168460249 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 43904 AATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGC 43963 || || | ||| | ||| ||||| ||| || || || |||||||| || ||| Sbjct 109472732 AACCTGAGCACAAGATGAAGCGTAGACTCCTTCTGGATGTTATAATCCGCCAAAGTACGA 109472791 Query 43964 TCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCT 44023 |||| ||||| |||||||| ||||| |||||||| ||||||||| | || | || ||| Sbjct 109472792 CCATCATCCAACTGTTTTCCGGCAAAGATCAACCGCTGCTGGTCCGGCGGGATGCCCTCT 109472851 Query 44024 TTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTA 44083 ||||| ||| || ||||| || | | ||||| | |||| | || | ||| Sbjct 109472852 TTATCCTGAATCTTGGCCTTGACGTTATCGATGGTATCCGAACTCTCCTCCTCCAACGTG 109472911 Query 44084 ATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || ||||| | |||||||||||||||||||| Sbjct 109472912 ATAGTCTTTCCGGTGAGGGTCTTCACAAATATTTGCAT 109472949 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 43904 AATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGC 43963 || || | ||| | ||| ||||| ||| || || || |||||||| || ||| Sbjct 109718074 AACCTGAGCACAAGATGAAGCGTAGACTCCTTCTGGATGTTATAATCCGCCAAAGTACGA 109718133 Query 43964 TCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCT 44023 |||| || || |||||||| ||||| |||||||| |||||||| | || | || ||| Sbjct 109718134 CCATCATCTAACTGTTTTCCGGCAAAGATCAACCGCTGCTGGTCTGGCGGGATGCCCTCT 109718193 Query 44024 TTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTA 44083 ||||| ||| || ||||| || | | |||||| | |||||| || | ||| Sbjct 109718194 TTATCCTGAATCTTGGCCTTGACGTTATCGATAGTATCCGAACTCTCCACCTCCAACGTG 109718253 Query 44084 ATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || ||||| | |||||||||||||||||||| Sbjct 109718254 ATAGTCTTTCCGGTCAGGGTCTTCACAAATATTTGCAT 109718291 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 |||||| ||||| |||||||| | || |||| ||||||||||| || ||||| Sbjct 109471810 CTCTTTCTGAATGTTATAATCAGCAAGAGTCCGACCATCATCCAATTGTTTACCCGCAAA 109471869 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 || ||||| |||||||| | || | || ||||| || ||||||| ||||| | Sbjct 109471870 GATTAACCGCTGCTGGTCAGGTGGGATCCCCTCTTTGTCCTGAATTTTTGCCTTGACATT 109471929 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 | |||||||||| | |||||| || | || || || || || ||||| ||||| || Sbjct 109471930 ATCAACAGTATCCGAACTCTCCACTTCCAGAGTGATCGTCTTCCCCGTTAAGGTCTTGAC 109471989 Query 44110 AAATATTTGCAT 44121 ||||| ||||| Sbjct 109471990 GAATATCTGCAT 109472001 Score = 95.1 bits (104), Expect = 9e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 |||||| ||||| |||||||| | || |||| ||||||||||| || ||||| Sbjct 109717470 CTCTTTCTGAATGTTATAATCAGCAAGAGTCCGACCATCATCCAATTGTTTACCCGCAAA 109717529 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 || ||||| |||||||| | || | || ||||| || ||||||| ||||| | Sbjct 109717530 GATTAACCGCTGCTGGTCGGGCGGGATCCCCTCTTTGTCCTGAATTTTTGCCTTGACATT 109717589 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 | |||||||||| | ||| || || | || || || || || || || ||||| || Sbjct 109717590 ATCAACAGTATCCGAACTCTCGACCTCTAGAGTGATCGTCTTCCCCGTCAAGGTCTTGAC 109717649 Query 44110 AAATATTTGCAT 44121 ||||| ||||| Sbjct 109717650 GAATATCTGCAT 109717661 >seq15 Length=171247636 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||| | || | ||| | ||| || ||| ||| || ||||| || || ||| | Sbjct 34231186 CCTCCTCTAAGCCTGAGCACAAGATGGAGTGTGGACTCCTTCTGAATGTTGTAGTCGGCT 34231127 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 || ||| |||| || | ||||| || ||||| ||||| || |||||||| | || Sbjct 34231126 AAAGTACGGCCATCTTCAAGCTGTTTACCAGCAAAGATCAATCGCTGCTGGTCAGGTGGG 34231067 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | || ||||||||| || || ||||| || ||| || |||| || || Sbjct 34231066 ATGCCCTCTTTATCTTGGATCTTAGCCTTGACATTATCAATGGTGTCTGAGCTTTCAACT 34231007 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || ||||| || |||||||||||||| ||||| || ||||| Sbjct 34231006 TCCAAAGTGATTGTCTTTCCGGTTAAAGTCTTAACAAAGATCTGCAT 34230960 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||| | || | ||| | ||| || ||| ||| || ||||| || || ||| | Sbjct 34348589 CCTCCTCTAAGCCTGAGCACAAGATGGAGTGTGGACTCCTTCTGAATGTTGTAGTCGGCT 34348530 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 || ||| |||| || | ||||| || ||||| ||||| || |||||||| | || Sbjct 34348529 AAAGTACGGCCATCTTCAAGCTGTTTACCGGCAAAGATCAATCGCTGCTGGTCAGGTGGG 34348470 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | || ||||||||| || || ||||| || ||| || |||| || || Sbjct 34348469 ATGCCCTCTTTATCTTGGATCTTAGCCTTGACATTATCAATGGTGTCTGAGCTTTCAACT 34348410 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || ||||| || |||||||||||||| ||||| || ||||| Sbjct 34348409 TCCAAAGTGATTGTCTTTCCGGTTAAAGTCTTAACAAAGATCTGCAT 34348363 >seq1 Length=153905722 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || |||||||| || | ||||||||| ||||| || || ||||| |||||||| Sbjct 17865028 CCACCTCTCAACCTCAGCACCAAATGAAGCGTAGATTCCTTCTGAATGTTATAATCCGCC 17864969 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 || ||| |||| |||| ||||| || ||||| |||| || || ||||| | || Sbjct 17864968 AAAGTCCGCCCATCTTCCAGCTGTTTACCGGCAAAGATCAGCCTCTGTTGGTCTGGTGGG 17864909 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||||||| ||| ||| ||||| | ||| ||||| | ||| || Sbjct 17864908 ATCCCTTCTTTATCTTGAATCTTTGCCTTGACATTGTCAATCGTATCCGAGCTCTCAACT 17864849 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || || || || || ||||| ||||| || ||||| Sbjct 17864848 TCAAGAGTGATGGTCTTTCCAGTCAACGTCTTAACAAAGATCTGCAT 17864802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354770993154144