Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq4 102 7e-17 seq1 102 7e-17 >seq4 Length=178899001 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||| | | ||||||||||| ||| || || || || ||||| ||||||||||| | Sbjct 81195861 CCTCCCCTCAGCCTCAACACCAGATGCAGAGTCGACTCCTTTTGGATGTTGTAATCCGCA 81195920 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | |||||||| ||||| |||||| | || |||||||| || || || Sbjct 81195921 AGAGTCCTGCCGTCTTCCAACTGTTTACCCGCAAAGATGAGCCTCTGCTGGTCCGGTGGG 81195980 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGT 20160 | || || ||||| || ||| |||||| | | | | || ||| || | || Sbjct 81195981 ATACCCTCCTTGTCCTGGATCTTTGCTTTCACGTTGTCGATAGTGTCG-GAGCTCTCGAC 81196039 Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||| ||||| || |||||||| || || ||||| |||||||| Sbjct 81196040 CTCCAAGGTGATGGTCTTACCGGTCAAGGTCTTAACAAAGATTTGCAT 81196087 >seq1 Length=153905722 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| ||||||| ||||||||| || |||||||| || || ||||| ||||| || Sbjct 17865028 CCACCTCTCAACCTCAGCACCAAATGAAGCGTAGATTCCTTCTGAATGTTATAATCCGCC 17864969 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| |||||||| ||||| || ||| | || ||||||||||| || || Sbjct 17864968 AAAGTCCGCCCATCTTCCAGCTGTTTACCGGCAAAGATCAGCCTCTGTTGGTCTGGTGGG 17864909 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGT 20160 | |||||||| || ||| ||| || || | | ||| | ||| | || | || Sbjct 17864908 ATCCCTTCTTTATCTTGAATCTTTGCCTTGACATTGTCAATCGTATC-CGAGCTCTCAAC 17864850 Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| | || ||||| || || |||||||| || ||||| || ||||| Sbjct 17864849 TTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTAACAAAGATCTGCAT 17864802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419579386237368