Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq15 127 2e-24 >seq15 Length=171247636 Score = 127 bits (140), Expect = 2e-24 Identities = 367/561 (65%), Gaps = 9/561 (2%) Strand=Plus/Plus Query 13138 CTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTT 13197 |||| ||| || || || ||||| || ||||| || || |||| ||| | |||||| Sbjct 39549693 CTTATACAGCAAGCAAGCGAAATCGCAATGCAAACCCTCGTCTCGCGATATCAACTCGTT 39549752 Query 13198 TGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGA 13257 || || |||| ||||||||| | ||| || || || | ||| || |||||| ||| Sbjct 39549753 CGAGAACGTTAAACCCGGCATCAACCCACGCTTCTTCAACCAGAAAATAGCACAAAAGCT 39549812 Query 13258 ACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACT 13317 ||| ||||| |||||||||||||| ||||| || || | || || || ||| Sbjct 39549813 ACCAGAAAAGAATATTCCTTCAACACAGGCAAAGGCAATTATTCTCTCTGCAAACG---- 39549868 Query 13318 ATT-TTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATAT 13376 ||| | || || |||||||| | ||||| || || |||| | || || | ||| Sbjct 39549869 ATTCTGAACCGTCGATCCACTTCATCGCCCAATTCGCCTTTTTCTGTACACA--TGGTAT 39549926 Query 13377 TTTCT--ATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTAT 13434 | ||| || || || ||| |||||||| | ||| || || | || | Sbjct 39549927 TGTCTCAATAGCACGGAACAAACGGTTTTTTTCAACAGAATCTTTGATGTACGATTCCAA 39549986 Query 13435 CAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACA 13494 || || || |||||||| || || ||||| || ||||| ||||| || || ||||| Sbjct 39549987 CAGCAAACTGTACATTTCAGAGTGGATATTCTCAATCGCGATTTGAAAGCCGTAAAAGGC 39550046 Query 13495 TCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTAT 13554 | ||||| || | ||| ||||| || | | || | |||||| || || Sbjct 39550047 ACGCGCCTCGGAGATCTGTACTTCTTTCATGAAGCGGCCAGCGAGGTTTTCCAATACAAT 39550106 Query 13555 CCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGA 13614 ||||| ||||| || || || |||| ||| |||| || | |||||| || | Sbjct 39550107 GCCGTCTGATGCAGCGAAGAAGGCGAGTACGTGAGTAATGAAGTGACGTTCGTTGTCGGT 39550166 Query 13615 CAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGA 13674 || ||| | | | |||| |||||| || || || || ||||||| || || Sbjct 39550167 TAAGGAGTCCCAGTGTTGTTGGTCTTGTGATAAGTCGACTTCTTCTGCGGTCCAGAATGA 39550226 Query 13675 AGCAACAGCCTTCTTATACAT 13695 || | ||||| || ||||| Sbjct 39550227 GGCTTCGGCCTTTTTGTACAT 39550247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430974374030256