Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq4 89.7 4e-13 seq15 86.0 5e-12 >seq4 Length=178899001 Score = 89.7 bits (98), Expect = 4e-13 Identities = 141/197 (72%), Gaps = 10/197 (5%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||||||||| ||||||||||| ||||| || |||| |||| ||||||||| || | Sbjct 81196124 CTCCTTTTGGATGTTGTAATCGGCCAAGGTGCGGCCGTCTTCCAATTGCTTACCGGCGAA 81196183 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | ||||||||| || || | || |||||||| ||| || |||| | || Sbjct 81196184 GATCAGACGCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGAATCTT-TGCT---TTGA 81196239 Query 48655 CG----CTATGGTATCGGTAGACTCCG-TCTCGACTGTTATGGTTTTACCGGTGAGAGTT 48709 || | |||||||||| || | || ||| | || ||||| ||||| || | ||| Sbjct 81196240 CGTTATCGATGGTATCGG-AGCTTTCGACCTCAAGGGTGATGGTCTTACCAGTCAAAGTC 81196298 Query 48710 TTCACAAAAATCTGCAT 48726 |||||||| || ||||| Sbjct 81196299 TTCACAAAGATTTGCAT 81196315 >seq15 Length=171247636 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582 || || ||| |||||||||||||||||| || || | | || || | ||||||||||| Sbjct 26150965 TGGAGGGTGGACTCCTTTTGAATGTTGTAGTCTGCAAGAGTG-CGTCCATCCTCCAGCTG 26151023 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || || | |||||| ||| || | | |||||||||| ||| || Sbjct 26151024 CTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGAATCTT 26151083 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | ||| | | || ||||| | |||| ||| | ||||| || || || || Sbjct 26151084 CGCCTTCACGTTGTCAATTGTATCCGAGCTCTCCACCTCAAGCGTTATAGTCTTCCCAGT 26151143 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||||| ||||| ||||||||||| Sbjct 26151144 CAGAGTCTTCACGAAAATCTGCAT 26151167 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | | ||| | ||| | ||| || ||| |||||| || |||||||| || ||| Sbjct 26151853 CCTCCTCTAAGCCTGAGCACAAGATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCC 26151912 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || |||| || ||||| |||||| | | || | | |||||| || || Sbjct 26151913 AAAGTACGGCCGTCTTCAAGCTGTTTACCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGG 26151972 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | ||| |||||| ||| || ||||| | | || ||||| | | ||| Sbjct 26151973 ATGCCTTCTTTGTCCTGAATCTTGGCCTTGACATTGTCAATTGTATCAGAACTCTCAACT 26152032 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| || ||||| ||||||||||| ||||||||||| Sbjct 26152033 TCAAGAGTGATGGTCTTGCCGGTAAGAGTTTTCACGAAAATCTGCAT 26152079 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | || ||| | ||| | ||||| || |||||| ||||||||||| ||||| Sbjct 34348361 CCTCCCCTCAGCCTGAGCACAAGGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAGCT 34348302 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 ||| || |||| || ||||| |||||| | | || | | |||||| || || Sbjct 34348301 AATGTACGGCCGTCTTCAAGCTGTTTACCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGG 34348242 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | ||| |||||| ||| || ||| | | | || ||||| | | ||| Sbjct 34348241 ATCCCTTCTTTGTCCTGAATCTTAGCCTTTACATTGTCAATTGTATCAGAACTCTCAACT 34348182 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| || || || ||||||||||| ||||||||||| Sbjct 34348181 TCAAGAGTGATGGTCTTGCCAGTAAGAGTTTTCACGAAAATCTGCAT 34348135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421243355249528