Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq15 114 1e-20 seq12 95.1 1e-14 seq14 87.8 2e-12 >seq15 Length=171247636 Score = 114 bits (126), Expect = 1e-20 Identities = 365/567 (64%), Gaps = 5/567 (1%) Strand=Plus/Plus Query 21464 TTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTA 21523 ||| ||| ||| || || ||||| ||||||||||| || || | ||| || || || Sbjct 39549694 TTATACAGCAAGCAAGCGAAATCGCAATGCAAACCCTCGTCTCGCGATATCAACTCGTTC 39549753 Query 21524 GAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT 21583 || || |||||||| ||||| || || | ||| || ||||| || || | | |||| ||| Sbjct 39549754 GAGAACGTTAAACCCGGCATCAACCCACGCTTCTTCAACCAGAAAATAG-CACAAAAGCT 39549812 Query 21584 -CCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGA 21642 || |||||||| || || ||||| ||||| |||| || || || | | | || Sbjct 39549813 ACCAGAAAAGAATATTCCTTCAACACAGGCAAAGGCAATTATTC--TCTCTGCA-AACGA 39549869 Query 21643 TTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGT 21702 |||| | | ||||| || ||||| || ||||||| | | ||| ||||| Sbjct 39549870 TTCTGAACCGTCGATCCACTTCATCGCCCAATTCGCCTTTTTCTGTACACATGGTATTGT 39549929 Query 21703 ATCAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNN 21762 |||||||| || | | | ||||||||| | ||| | ||| Sbjct 39549930 CTCAATAGCACGGAACAAACGGTTTTTTTCAACAGAATCTTTGATGTACGATTCCAACAG 39549989 Query 21763 NNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCT 21822 ||| ||||||||||| || ||||| || ||||| || ||||| |||||||| | Sbjct 39549990 CAAACTGTACATTTCAGAGTGGATATTCTCAATCGCGATTTGAAAGCCGTAAAAGGCACG 39550049 Query 21823 TGCCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCC 21882 ||||| || || || || || || ||| | |||||| ||| || || Sbjct 39550050 CGCCTCGGAGATCTGTACTTCTTTCATGAAGCGGCCAGCGAGGTTTTCCAATACAATGCC 39550109 Query 21883 ATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAA 21942 || || || || || || | || | | || || | |||||||| || ||||| Sbjct 39550110 GTCTGATGCAGCGAAGAAGGCGAGTACGTGAGTAATGAAGTGACGTTCGTTGTCGGTTAA 39550169 Query 21943 TTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGC 22002 | ||| | | | |||| |||||| || |||||||| | ||||| || || Sbjct 39550170 GGAGTCCCAGTGTTGTTGGTCTTGTGATAAGTCGACTTCTTCTGCGGTCCAGAATGAGGC 39550229 Query 22003 AATAGCCTTTTTATACATAATCCAGAT 22029 |||||||| ||||| |||||| Sbjct 39550230 TTCGGCCTTTTTGTACATTTCCCAGAT 39550256 >seq12 Length=166489593 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/125 (78%), Gaps = 4/125 (3%) Strand=Plus/Plus Query 21472 CAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGT 21531 || ||| ||||| |||||||| | ||| || || || ||| | |||||| || || || Sbjct 16892781 CAGACAAGCAAAGTCACAATGTAGACCCTCGTCTCTGGATATAAGTTCATTTGAGAAAGT 16892840 Query 21532 TAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAA 21591 || || ||||||||||||||||| |||| |||||| ||||| ||||| | ||||||| Sbjct 16892841 CAACCCTGGCATTAATCCTCTCTTCTTTAGCCAAAAAATTGA-GCAAAAG---CTGAAAA 16892896 Query 21592 GAAAA 21596 |||| Sbjct 16892897 AAAAA 16892901 >seq14 Length=174509413 Score = 87.8 bits (96), Expect = 2e-12 Identities = 112/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 21470 ATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAAT 21529 ||||| || || ||||| || || ||||||||||| | |||||||| || || ||| Sbjct 142133087 ATCAAGCACGCGAAATCGCAGTGTAAACCTTCATCTCGTGAGATTAATTCGTTTGAGAAT 142133028 Query 21530 GTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGC-TCCTGA 21588 || | || |||||||| || | |||||| | ||| ||||| | | || | || |||||| Sbjct 142133027 GTCAGTCCCGGCATTAACCCGCGCTTTTTCAGCCAGAATATCG-CACAGAAGCTTCCTGA 142132969 Query 21589 AAAGAAAATGCCCTCAACGGCAGCAAATGCAA 21620 ||||| || || || ||| ||||| |||| Sbjct 142132968 GAAGAATATTCCTTCGACGCAGGCAAAAGCAA 142132937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531890640694720