Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12]
1,528 sequences; 3,027,844,945 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq15 114 1e-20
seq12 95.1 1e-14
seq14 87.8 2e-12
>seq15
Length=171247636
Score = 114 bits (126), Expect = 1e-20
Identities = 365/567 (64%), Gaps = 5/567 (1%)
Strand=Plus/Plus
Query 21464 TTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTA 21523
||| ||| ||| || || ||||| ||||||||||| || || | ||| || || ||
Sbjct 39549694 TTATACAGCAAGCAAGCGAAATCGCAATGCAAACCCTCGTCTCGCGATATCAACTCGTTC 39549753
Query 21524 GAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT 21583
|| || |||||||| ||||| || || | ||| || ||||| || || | | |||| |||
Sbjct 39549754 GAGAACGTTAAACCCGGCATCAACCCACGCTTCTTCAACCAGAAAATAG-CACAAAAGCT 39549812
Query 21584 -CCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGA 21642
|| |||||||| || || ||||| ||||| |||| || || || | | | ||
Sbjct 39549813 ACCAGAAAAGAATATTCCTTCAACACAGGCAAAGGCAATTATTC--TCTCTGCA-AACGA 39549869
Query 21643 TTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGT 21702
|||| | | ||||| || ||||| || ||||||| | | ||| |||||
Sbjct 39549870 TTCTGAACCGTCGATCCACTTCATCGCCCAATTCGCCTTTTTCTGTACACATGGTATTGT 39549929
Query 21703 ATCAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNN 21762
|||||||| || | | | ||||||||| | ||| | |||
Sbjct 39549930 CTCAATAGCACGGAACAAACGGTTTTTTTCAACAGAATCTTTGATGTACGATTCCAACAG 39549989
Query 21763 NNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCT 21822
||| ||||||||||| || ||||| || ||||| || ||||| |||||||| |
Sbjct 39549990 CAAACTGTACATTTCAGAGTGGATATTCTCAATCGCGATTTGAAAGCCGTAAAAGGCACG 39550049
Query 21823 TGCCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCC 21882
||||| || || || || || || ||| | |||||| ||| || ||
Sbjct 39550050 CGCCTCGGAGATCTGTACTTCTTTCATGAAGCGGCCAGCGAGGTTTTCCAATACAATGCC 39550109
Query 21883 ATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAA 21942
|| || || || || || | || | | || || | |||||||| || |||||
Sbjct 39550110 GTCTGATGCAGCGAAGAAGGCGAGTACGTGAGTAATGAAGTGACGTTCGTTGTCGGTTAA 39550169
Query 21943 TTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGC 22002
| ||| | | | |||| |||||| || |||||||| | ||||| || ||
Sbjct 39550170 GGAGTCCCAGTGTTGTTGGTCTTGTGATAAGTCGACTTCTTCTGCGGTCCAGAATGAGGC 39550229
Query 22003 AATAGCCTTTTTATACATAATCCAGAT 22029
|||||||| ||||| ||||||
Sbjct 39550230 TTCGGCCTTTTTGTACATTTCCCAGAT 39550256
>seq12
Length=166489593
Score = 95.1 bits (104), Expect = 1e-14
Identities = 97/125 (78%), Gaps = 4/125 (3%)
Strand=Plus/Plus
Query 21472 CAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGT 21531
|| ||| ||||| |||||||| | ||| || || || ||| | |||||| || || ||
Sbjct 16892781 CAGACAAGCAAAGTCACAATGTAGACCCTCGTCTCTGGATATAAGTTCATTTGAGAAAGT 16892840
Query 21532 TAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAA 21591
|| || ||||||||||||||||| |||| |||||| ||||| ||||| | |||||||
Sbjct 16892841 CAACCCTGGCATTAATCCTCTCTTCTTTAGCCAAAAAATTGA-GCAAAAG---CTGAAAA 16892896
Query 21592 GAAAA 21596
||||
Sbjct 16892897 AAAAA 16892901
>seq14
Length=174509413
Score = 87.8 bits (96), Expect = 2e-12
Identities = 112/152 (74%), Gaps = 2/152 (1%)
Strand=Plus/Minus
Query 21470 ATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAAT 21529
||||| || || ||||| || || ||||||||||| | |||||||| || || |||
Sbjct 142133087 ATCAAGCACGCGAAATCGCAGTGTAAACCTTCATCTCGTGAGATTAATTCGTTTGAGAAT 142133028
Query 21530 GTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGC-TCCTGA 21588
|| | || |||||||| || | |||||| | ||| ||||| | | || | || ||||||
Sbjct 142133027 GTCAGTCCCGGCATTAACCCGCGCTTTTTCAGCCAGAATATCG-CACAGAAGCTTCCTGA 142132969
Query 21589 AAAGAAAATGCCCTCAACGGCAGCAAATGCAA 21620
||||| || || || ||| ||||| ||||
Sbjct 142132968 GAAGAATATTCCTTCGACGCAGGCAAAAGCAA 142132937
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531890640694720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |