Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq14 219 5e-52 seq15 206 3e-48 seq9 98.7 1e-15 >seq14 Length=174509413 Score = 219 bits (242), Expect = 5e-52 Identities = 403/586 (69%), Gaps = 10/586 (2%) Strand=Plus/Minus Query 33298 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 33357 ||||| || |||||||||||||| | ||| || |||| |||| |||||| || || Sbjct 142133087 ATCAAGCACGCGAAATCGCAGTGTAAACCTTCATCTCGTGAGATTAATTCGTTTGAGAAT 142133028 Query 33358 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAA 33417 || ||||| ||||||| || |||||||| ||||| ||||| | | ||| ||| || Sbjct 142133027 GTCAGTCCCGGCATTAACCCGCGCTTTTTCAGCCAGAATATCGCACAGAAGCTTCCTGAG 142132968 Query 33418 AAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCGC 33472 ||||| |||||||| || ||| ||||| ||||| | | |||| || ||| ||| | Sbjct 142132967 AAGAATATTCCTTCGAC-GCAGGCAAAAGCAATGATCCGCTCTGCA-AACGATTCGGATC 142132910 Query 33473 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33532 ||| ||||| || | ||||||| ||| ||||| | | || || || ||||| | Sbjct 142132909 CGTC---GATCCATTTCAGCGCCCAATTGGCTTTCTTCTGGATGCAGGGGATGGTTTCAA 142132853 Query 33533 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33592 | || ||| ||| || |||||| | |||||| | || | |||| || |||| Sbjct 142132852 TCGCGCGAAATAGACGATTCTTTTCAGTGGAATCTTTGATGTAGGATTCGAGTAACAGAC 142132793 Query 33593 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33652 | ||||| || || || |||||||||||||| || ||||| |||||||| | |||| Sbjct 142132792 TGTACATCTCGGAGTGGATGTTTTCAATGGCGATTTGAAAGCCGTAGAACGCACGCGCCT 142132733 Query 33653 CGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCAC 33712 ||| ||||| ||||| | ||||| | || | ||||| || || ||||| Sbjct 142132732 CGGCGATCTGGACTTCCTTCATGAATCGGCCGGCGAGGTTTTCGAGGACGATGCCGTCTG 142132673 Query 33713 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT 33772 || || || || || | || || | || || | |||| | ||||| | | Sbjct 142132672 AAGCGGCGAAGAAGGCGAGGACGTGAGTGATGAAGTGGCGTTCGCCGTCGGTTAGGGTTT 142132613 Query 33773 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTG 33832 ||| | | | |||| || | ||||||||||| ||||||| ||||| ||||| | Sbjct 142132612 CCCATTGACGGTGGTCTTGTGAGAGGTCTACTTCTTCTGCTGTCCAGAATGAGGCCTCGG 142132553 Query 33833 CCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAAT 33878 | ||||| ||||| | |||||| | |||||||||||||| || Sbjct 142132552 CTTTTTTGTACATTTCCCAGATTTGGGGGTATTGGATTGGGAACAT 142132507 >seq15 Length=171247636 Score = 206 bits (228), Expect = 3e-48 Identities = 598/912 (66%), Gaps = 20/912 (2%) Strand=Plus/Plus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 || || || || || || | || || |||||||| || || || | ||| || || Sbjct 39549415 TTCTGATACTCCCCAACCCTCTTCTCAAAAAAATTCGTCTTCCCCTGCAACGAAATCAAC 39549474 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132 ||||| ||||||||||||| | || ||| | ||| | | |||| || | | Sbjct 39549475 TCCATCCAATCAAACGGATTCGACACGCCATACAATTTCTCACATCCTAACGACCCCAGC 39549534 Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192 || |||||||| || || || ||||| |||||| ||| |||||| || | | Sbjct 39549535 AACCTATCCGCAACAAACTCAATATACTGACTCATCAACCCACCATTCATCCCAACCAAC 39549594 Query 33193 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 33252 | || | || || || ||| || ||||| |||||||| | | ||| Sbjct 39549595 CCACAGGGTAAGGCATCACAAACAAACTCCCTCTCAATCTCCACCGCATCCGCCACAATC 39549654 Query 33253 GATCTAACGGTTTCTTCACTCGG---TGGATGCAATAAATGTTTAAACATCAAACATGCG 33309 | | || || |||||| || || ||| || | || ||| ||| || ||| Sbjct 39549655 CCTTTCACCCGCTCCTCACTCAACTTTGTATTCAACAACT---TATACAGCAAGCAAGCG 39549711 Query 33310 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGC 33369 |||||||| |||| ||||||||||| || | ||||| || ||||| | || ||| Sbjct 39549712 AAATCGCAATGCAAACCCTCGTCTCGCGATATCAACTCGTTCGAGAACGTTAAACCCGGC 39549771 Query 33370 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCAGAAAAGAAGATTCC 33428 || | |||||||| || | ||| || || | | | || | | ||||||||||| ||||| Sbjct 39549772 ATCAACCCACGCTTCTTCAACCAGAAAATAGCA-CAAAAGCTACCAGAAAAGAATATTCC 39549830 Query 33429 TTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG--TCATGTATCCAC 33486 ||| || ||||||||||| | ||||||| | || || ||| | | |||||| Sbjct 39549831 TTCAACACAGGCAAAGGCAATTATTCTCTCTGC--AAACGATTCTGAACCGTCGATCCAC 39549888 Query 33487 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33546 || ||||||| ||||| || | |||||| || || || || || ||| || | | Sbjct 39549889 TTCATCGCCCAATTCGCCTTTTTCTGTACACATGGTATTGTCTCAATAGCACGGAACAAA 39549948 Query 33547 TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAA 33606 |||||||||| | |||||| | || | || | || | ||| |||||||| || Sbjct 39549949 CGGTTTTTTTCAACAGAATCTTTGATGTACGATTCCAACAGCAAACTGTACATTTCAGAG 39550008 Query 33607 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACT 33666 || || || ||||| || || ||||| ||||| || | ||||||| ||||||||| Sbjct 39550009 TGGATATTCTCAATCGCGATTTGAAAGCCGTAAAAGGCACGCGCCTCGGAGATCTGTACT 39550068 Query 33667 TCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 33726 ||| | || || | || | ||||| || || ||||| || || || || Sbjct 39550069 TCTTTCATGAAGCGGCCAGCGAGGTTTTCCAATACAATGCCGTCTGATGCAGCGAAGAAG 39550128 Query 33727 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTT---TATTCCAATCATTG 33783 || | ||| || | || || | ||||| ||| ||| | ||| | ||| Sbjct 39550129 GCGAGTACGTGAGTAATGAAGTGACGTTCGT----TGTCGGTTAAGGAGTCCCAGTGTTG 39550184 Query 33784 AT-ATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 33842 | |||| |||| || |||||||| | ||||| ||||| || || |||||||| || Sbjct 39550185 TTGGTCTTGTGATAAGTCGACTTCTTCTGCGGTCCAGAATGAGGCTTCGGCCTTTTTGTA 39550244 Query 33843 CATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGC 33902 ||| | |||||| | |||||||||||||| || ||||| | || ||||| | Sbjct 39550245 CATTTCCCAGATTTGTGGGTATTGGATTGGGAACATGCAGAATCTGTCGGGGTTTGGGGT 39550304 Query 33903 AAGGATGGGTTC 33914 ||||| || || Sbjct 39550305 TAGGATTGGGTC 39550316 Score = 86.0 bits (94), Expect = 8e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 || || ||||| |||| ||| |||||||| || || ||||| | | || | | || Sbjct 145648153 GTCCCTGCATTGAATAGGGTGGGAGAAGCATGAGTGAACCACCTCTGTGACATCAAATGA 145648212 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 || |||| || | || || || || || ||||| || || | || | ||| ||| Sbjct 145648213 TAAGTCTTGATTACCGAATCAATGTCATCTTTGTGAATCCCAACCGAAACCCTCATCAAC 145648272 Query 63732 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63791 || || |||||||||||||| | ||| || ||||| | || || | || | Sbjct 145648273 ATATGTTGAGGTCTTTCAACAACCTTCCCTCCAATCTTCAATAGATATGACCTCTCAAGG 145648332 Query 63792 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 ||||||||||||||||| | || |||||| || ||||| ||||| Sbjct 145648333 GTTTTAAAACCAAAATAATCATAATCAAAGTCCCGATCGTATATAAT 145648379 >seq9 Length=209865144 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 || || ||||| || | ||| |||||||| || || ||||| ||| || | | || Sbjct 123174741 GTCCCTGCATTGAAGAGGGTGGGAGAAGCATGTGTGAACCACCTTTGTGACATCAAATGA 123174800 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 || |||| || | || || || || || ||||| || ||||| || | ||| | | Sbjct 123174801 TAAGTCTTGATGACAGAATCAATGTCATCTTTGTGAATCCCAACTGCAACCCTCATCAGC 123174860 Query 63732 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63791 || || ||||||||||| || | ||| || || ||||||| ||| ||| | || | Sbjct 123174861 ATATGTTGAGGTCTTTCCACAACCTTCCCTTTGATCTTCAACAGGTATGATCTCTCAAGT 123174920 Query 63792 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 |||||||| |||||||| | || |||||| || ||||| || || Sbjct 123174921 GTTTTAAAGCCAAAATAATCATAATCAAAGTCCCGATCGTATATGAT 123174967 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 63372 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63431 ||||| ||||| | || | ||||| | || | || | ||||||||| ||||| || Sbjct 123174121 CCTCCTTGATCAACATAACGGGCGGTATCGTTGAAGACACGCAACATTGGGATAATGCCA 123174180 Query 63432 TTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63491 || ||| ||||||| || ||| || || || || | | |||||| ||| || || Sbjct 123174181 TTGGATGTACCATTTGTCCCGCGTATGTAACTCCCTGTCGAACGAATGTTATGAACAGAA 123174240 Query 63492 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATA 63551 | ||| || || ||||| ||| ||| | || ||| || || |||||||| || Sbjct 123174241 ACACCAATCCCACCTGCTGATTTGCTGATAACAGCACATTCCTTCAAAGTGTCATATATG 123174300 Query 63552 CCCTCTATGCTATCATCGATCATG 63575 || || ||||||||||| ||||| Sbjct 123174301 CCTTCAATGCTATCATCTTTCATG 123174324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622935301708480