Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq3 118 1e-21 seq12 95.1 1e-14 seq16 89.7 5e-13 seq4 89.7 5e-13 seq1 89.7 5e-13 seq17 86.0 6e-12 seq15 86.0 6e-12 >seq3 Length=168485022 Score = 118 bits (130), Expect = 1e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | ||||| ||||| |||| |||||| | ||||| | ||| | ||| Sbjct 118896082 AACATGCAGATCTTTGTCAAAACCCTAACCGGAAAAACAATCACTCTAGAAGTCGAAAGC 118896023 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||| ||||| | |||||| ||||| ||||||||||| || || || ||| Sbjct 118896022 TCCGACACAATCGACAACGTCAAAGCCAAGATCCAAGACAAAGAAGGAATCCCACCGGAT 118895963 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 |||||| | ||||| | || ||| ||||| |||||||| | |||| | | ||| || Sbjct 118895962 CAACAACGTCTCATCTTCGCCGGAAAACAGCTCGAAGAGGGCAGAACCCTAGCCGATTAC 118895903 Query 26946 AACATTCAAAAAGAATCTAC 26965 ||||| ||||||||||| || Sbjct 118895902 AACATCCAAAAAGAATCCAC 118895883 >seq12 Length=166489593 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || |||||||| ||||| || ||| | || ||| | || | ||||| Sbjct 69697979 AATGCAGATCTTCGTAAAAACCTTAACGGGCAAAACAATAACCCTAGAGGTCGAATCCTC 69697920 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||| ||||| | || || || || ||||||||||| || || || || || Sbjct 69697919 AGACACAATCGACAACGTAAAGTCCAAAATCCAAGACAAAGAAGGCATCCCACCGGACCA 69697860 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATA 26946 |||| | ||||| | || ||| ||||| || || || | |||| | | ||| ||||| | Sbjct 69697859 ACAACGCCTCATCTTCGCCGGAAAACAGCTGGAGGACGGCAGAACCCT-AGCGGACTACA 69697801 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| || || || || || ||||| ||||||| Sbjct 69697800 ACATCCAGAAGGAGTCAACGCTCCATTTGGTCCT 69697767 >seq16 Length=188620566 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/221 (69%), Gaps = 1/221 (0%) Strand=Plus/Plus Query 26760 TCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTA 26819 ||||||| | |||| | || || ||||| ||||||| || | ||||| |||| | Sbjct 106905977 TCAAACAGA-TGCAGATCTTCGTCAAAACCCTAACTGGCAAGACAATCACTCTCGAGGTC 106906035 Query 26820 GAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCT 26879 || |||||| ||||| | ||||| || || ||||| ||||| || || Sbjct 106906036 GAGAGTTCCGACACAATCGACAACGTCAAGGCGAAAATCCAAGACAAGGAAGGAATTCCC 106906095 Query 26880 CCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC 26939 || || || || || ||||| | || || |||||||||||||| | | | | || | Sbjct 106906096 CCAGACCAGCAGAGGCTCATCTTCGCTGGAAAACAACTCGAAGACGGTCGCACTCTCGCC 106906155 Query 26940 GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| ||||| ||||| || || ||| |||| ||||||| Sbjct 106906156 GACTACAACATCCAAAAGGAGTCCACTCTCCACTTGGTCCT 106906196 >seq4 Length=178899001 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| ||||||| || |||| ||| |||| | ||| Sbjct 81196771 ATGCAGATCTTTGTCAAAACCCTAACTGGCAAGACGATTACCCTCGAGGTTGAAAGCTCT 81196712 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| ||||| ||||| ||||| || || || || || Sbjct 81196711 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCCCCAGACCAG 81196652 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 ||| || | || | || || |||||||||||||| | | ||| ||| || || || Sbjct 81196651 CAACGATTGATCTTCGCTGGAAAACAACTCGAAGACGGCCG-AACTCTAGCTGATTACAA 81196593 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| || || || || ||| ||||| ||||||| Sbjct 81196592 CATCCAGAAGGAGTCAACTCTCCATTTGGTCCT 81196560 >seq1 Length=153905722 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || ||||| | ||||| ||||| |||| | Sbjct 17864118 ATGCAGATCTTCGTCAAGACTCTTACCGGAAAGACAATCACTCTCGAAGTAGAGAGCTCC 17864177 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| || || ||||| ||||| || || || || ||| Sbjct 17864178 GACACCATCGACAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATCCCCCCAGACCAA 17864237 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||| || || | || ||| |||||||| ||||| | |||| | || ||||| ||| Sbjct 17864238 CAAAGGCTTATCTTCGCCGGAAAACAACTTGAAGACGGCAGAACCCTCGCTGACTACAAC 17864297 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || ||||| || | || || || || || | || ||||| Sbjct 17864298 ATCCAGAAGGAATCCACACTTCACCTTGTTCTCCGATTGAGGGGAGG 17864344 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || || |||||||| | ||||| | ||| | || Sbjct 17864802 ATGCAGATCTTTGTTAAGACGTTGACTGGAAAGACCATCACTCTTGAAGTTGAGAGCTCG 17864861 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || || | ||||| ||||||| || ||||||||||| || || || ||| Sbjct 17864862 GATACGATTGACAATGTCAAGGCAAAGATTCAAGATAAAGAAGGGATCCCACCAGACCAA 17864921 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 || || || || | | ||| ||||| || ||||||| | || | || || ||||| Sbjct 17864922 CAGAGGCTGATCTTTGCCGGTAAACAGCTGGAAGATGGGCG-GACTTTGGCGGATTATAA 17864980 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||| || |||||||| | ||| |||| ||||| | ||||| || Sbjct 17864981 CATTCAGAAGGAATCTACGCTTCATTTGGTGCTGAGGTTGAGAGGTGG 17865028 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| | || ||||| | ||||| | ||| |||| Sbjct 17864346 ATGCAGATCTTTGTTAAAACGCTCACCGGAAAGACAATCACTCTTGAAGTAGAGAGTTCT 17864405 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||| ||||| | |||||| || || ||||||||||| || || || || || Sbjct 17864406 GACATGATCGACAATGTCAAAGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGACCAG 17864465 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | || ||| || ||||||||||||| |||| | | || || ||| Sbjct 17864466 CAGAGGCTGATCTTCGCCGGAAAGCAACTCGAAGATGGCAGAACCTTGGCGGATTACAAC 17864525 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || || ||| | ||||||||||| Sbjct 17864526 ATCCAGAAGGAGTCCACTCTTCATCTGGTCCT 17864557 >seq17 Length=214723238 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||| ||||| | || || ||||| |||| || || |||| || | || | ||||| Sbjct 210026452 CAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATAACGTTGGAGGTCGAATC 210026393 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 |||||| ||||| | || || ||||| ||||||||||| || || || || Sbjct 210026392 CTCCGACACAATCGACAACGTGAAGGCCAAGATCCAAGACAAAGAAGGCATCCCACCGGA 210026333 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACT 26943 || || | ||||| | || ||| ||||| |||||||| | |||| | | ||| |||| Sbjct 210026332 CCAGCAGCGGCTCATCTTCGCCGGAAAACAGCTCGAAGACGGCAGAACCCT-AGCGGACT 210026274 Query 26944 ATAACATTCAAAAAGAATCTACTATCCATCTGGT 26977 | ||||| || || || || || ||||| |||| Sbjct 210026273 ACAACATCCAGAAGGAGTCAACGCTCCATTTGGT 210026240 >seq15 Length=171247636 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA---TCA 26825 ||||| | ||||| || || ||||| ||||| | ||||| | ||| | ||| ||| Sbjct 34348363 ATGCAGATCTTTGTTAAGACTTTAACCGGAAAGACAATCACTTTGGAAGTTGAAAGCTCA 34348422 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||| || | ||||| ||||| || ||||| || || || || || Sbjct 34348423 ---GACACCATTGATAATGTCAAGGCTAAGATCCAAGATAAAGAGGGCATCCCACCTGAC 34348479 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTA 26944 || || || | || | | ||| ||||| || ||||||| | | | | ||| ||||| Sbjct 34348480 CAGCAGCGATTGATCTTTGCCGGTAAACAGCTTGAAGATGGCCGTA-CTTTAGCCGACTA 34348538 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||| || || || || ||||||| || || || ||||||||||| Sbjct 34348539 CAACATTCAGAAGGAGTCCACACTCCATCTTGTGCTCAGGCTTAGAGGAGG 34348589 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA---TCA 26825 ||||| | ||||| || || ||||| ||||| | ||||| | ||| | ||| ||| Sbjct 34230960 ATGCAGATCTTTGTTAAGACTTTAACCGGAAAGACAATCACTTTGGAAGTTGAAAGCTCA 34231019 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||| || | ||||| ||||| || ||||| || || || || || Sbjct 34231020 ---GACACCATTGATAATGTCAAGGCTAAGATCCAAGATAAAGAGGGCATCCCACCTGAC 34231076 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTA 26944 || || || | || | | || ||||| || ||||||| | | | | ||| ||||| Sbjct 34231077 CAGCAGCGATTGATCTTTGCTGGTAAACAGCTTGAAGATGGCCGTA-CTTTAGCCGACTA 34231135 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||| || || || || ||||||| || || || ||||||||||| Sbjct 34231136 CAACATTCAGAAGGAGTCCACACTCCATCTTGTGCTCAGGCTTAGAGGAGG 34231186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478653257548160