Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq15 116 1e-20 seq14 107 5e-18 >seq15 Length=171247636 Score = 116 bits (128), Expect = 1e-20 Identities = 161/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 22436 AGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCATTCGCGGAACGTC 22495 |||| ||||| |||||||| |||| ||||| || | | || || || || | Sbjct 39549913 AGAAAAAGGCGAATTGGGCGATGAAGTGGATCGACGGTTCAGAATCGTTTGCAGAGAGAA 39549854 Query 22496 TTATTGCATTTGC-TGTGGTTGAAGGCATTTTCTTTTCTGG-AGCATTTTGTGCAATCTT 22553 | ||||| ||||| |||| ||||||| || ||||||||||| ||| |||||||| || || Sbjct 39549853 TAATTGCCTTTGCCTGTG-TTGAAGGAATATTCTTTTCTGGTAGC-TTTTGTGCTATTTT 39549796 Query 22554 TTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCG 22613 ||| | || || |||| | ||||||||| ||||||| || || ||||| || || Sbjct 39549795 CTGGTTGAAGAAGCGTGGGTTGATGCCGGGTTTAACGTTCTCGAACGAGTTGATATCGCG 39549736 Query 22614 AGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATAT 22653 ||| |||||| | ||| |||||| || || |||| ||| Sbjct 39549735 AGACGAGGGTTTGCATTGCGATTTCGCTTGCTTGCTGTAT 39549696 Score = 93.3 bits (102), Expect = 1e-13 Identities = 157/221 (71%), Gaps = 5/221 (2%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| |||||| ||| ||||| || | || || | ||| | |||||| |||| | Sbjct 145648018 ATGAAAGACGATAGCATTGAGGGCATATACGATACTTTGAAGGAATGTGCTGTTATCAGC 145647959 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 || ||||| ||||||||||| || || || ||| | ||| | || | | |||||||| Sbjct 145647958 AAATCAGCAGGTGGAATTGGTGTCTCTATTCATAATATCCGTTCAACTGGA-AGTTACAT 145647900 Query 363741 TCGCGGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATA 363799 || || ||| || ||| || ||||| | | || ||||| ||||| ||| || ||| Sbjct 145647899 ACGTGGAACAAATGG-TACATCCAATGGCATTATCCCAATGCTGCGTGTCTTTAACGATA 145647841 Query 363800 CTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 |||| | || || ||||| || || || ||| | |||||| Sbjct 145647840 CTGCTCGATATGTTGACCAAGGAGGTGGCAAGAG-AAAGGG 145647801 >seq14 Length=174509413 Score = 107 bits (118), Expect = 5e-18 Identities = 172/244 (70%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 22403 TATTCCGCGCGATTCGCACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAAT 22462 |||| ||||||||| ||||| | | || |||| || || ||||||||||||||| Sbjct 142132841 TATTTCGCGCGATTGAAACCATCCCCTGCATCCAGAAGAAAGCCAATTGGGCGCTGAAAT 142132900 Query 22463 GGAT-GAACAAT--GAACGTTCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAG 22519 |||| || || ||| || || || || || | ||||| ||||| || |||| Sbjct 142132901 GGATCGACGGATCCGAA---TCGTTTGCAGAGCGGATCATTGCTTTTGCCTGCGTCGAAG 142132957 Query 22520 GCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGC 22579 | || ||||| || ||| || ||||| || || ||||| ||||| || | | |||| Sbjct 142132958 GAATATTCTTCTCAGGAAGCTTCTGTGCGATATTCTGGCTGAAAAAGCGCGGGTTAATGC 142133017 Query 22580 CGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTG 22639 |||| || || || ||||| || ||||| |||||||| ||| | || |||||| | Sbjct 142133018 CGGGACTGACATTCTCAAACGAATTAATCTCACGAGATGAAGGTTTACACTGCGATTTCG 142133077 Query 22640 CGTG 22643 |||| Sbjct 142133078 CGTG 142133081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303328083594896