Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq3 120 3e-22 seq1 111 1e-19 seq4 98.7 9e-16 seq17 93.3 4e-14 seq16 86.0 5e-12 seq14 84.2 2e-11 >seq3 Length=168485022 Score = 120 bits (132), Expect = 3e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | ||||| ||||| |||| |||||| | || || | |||||||| | Sbjct 118896082 AACATGCAGATCTTTGTCAAAACCCTAACCGGAAAAACAATCACTCTAGAAGTCGAAAGC 118896023 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||| ||||| | |||||| ||||| ||||||||||| || || || ||| Sbjct 118896022 TCCGACACAATCGACAACGTCAAAGCCAAGATCCAAGACAAAGAAGGAATCCCACCGGAT 118895963 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 ||||| | || || | || ||| || || |||||||| | ||||| | | |||||| Sbjct 118895962 CAACAACGTCTCATCTTCGCCGGAAAACAGCTCGAAGAGGGCAGAACCCTAGCCGATTAC 118895903 Query 24168 AACATTCAAAAAGAATCTACAATTCA 24193 ||||| ||||||||||| || |||| Sbjct 118895902 AACATCCAAAAAGAATCCACCCTTCA 118895877 >seq1 Length=153905722 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || |||||||| | || || | ||||| ||| | Sbjct 17864802 ATGCAGATCTTTGTTAAGACGTTGACTGGAAAGACCATCACTCTTGAAGTTGAGAGCTCG 17864861 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | ||||| ||||||| || |||||||| || || || || ||| Sbjct 17864862 GATACGATTGACAATGTCAAGGCAAAGATTCAAGATAAAGAAGGGATCCCACCAGACCAA 17864921 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCG-ATTATAA 24169 ||||| ||||| | | ||| || || || ||||||| | | | | ||| ||||||| Sbjct 17864922 CAGAGGCTGATCTTTGCCGGTAAACAGCTGGAAGATGGGCGGA-CTTTGGCGGATTATAA 17864980 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||| || |||||||| ||||||| ||| | || |||||||| || Sbjct 17864981 CATTCAGAAGGAATCTACGCTTCATTTGGTGCTGAGGTTGAGAGGTGG 17865028 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || ||||| | || || ||||||| ||| | | Sbjct 17864118 ATGCAGATCTTCGTCAAGACTCTTACCGGAAAGACAATCACTCTCGAAGTAGAGAGCTCC 17864177 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| || || ||||| ||||| || || || || ||| Sbjct 17864178 GACACCATCGACAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATCCCCCCAGACCAA 17864237 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || || || | || ||| || ||||| ||||| | ||||| | || || || ||| Sbjct 17864238 CAAAGGCTTATCTTCGCCGGAAAACAACTTGAAGACGGCAGAACCCTCGCTGACTACAAC 17864297 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || ||||| ||| |||| | || | ||||||| ||||| Sbjct 17864298 ATCCAGAAGGAATCCACACTTCACCTTGTTCTCCGATTGAGGGGAGG 17864344 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | || ||||| | || || | ||||| ||| Sbjct 17864346 ATGCAGATCTTTGTTAAAACGCTCACCGGAAAGACAATCACTCTTGAAGTAGAGAGTTCT 17864405 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||| ||||| | |||||| || || ||||||||||| || || || || || Sbjct 17864406 GACATGATCGACAATGTCAAAGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGACCAG 17864465 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || ||| |||||||||||||||| ||||| | | ||||| ||| Sbjct 17864466 CAGAGGCTGATCTTCGCCGGAAAGCAACTCGAAGATGGCAGAACCTTGGCGGATTACAAC 17864525 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 || || || || || || ||||| Sbjct 17864526 ATCCAGAAGGAGTCCACTCTTCAT 17864549 >seq4 Length=178899001 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| |||| || || |||||||| | || ||||| | | Sbjct 81196543 ATGCAAATCTTCGTCAAAACCCTAACCGGCAAGACGATTACCCTTGAGGTCGAAAGCTCC 81196484 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| || || || || || || ||| Sbjct 81196483 GACACCATCGATAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCACCAGACCAA 81196424 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| |||| | || || ||||| | || || | ||| | | |||||| ||| Sbjct 81196423 CAGAGATTGATCTTCGCTGGTAAGCAGTTGGAGGACGGCAGGACTCTTGCCGATTACAAC 81196364 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||||||| || || || ||||||| || Sbjct 81196363 ATTCAAAAGGAGTCAACTCTTCATTTGGT 81196335 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| ||||||| || |||||||| |||| || || | Sbjct 81196771 ATGCAGATCTTTGTCAAAACCCTAACTGGCAAGACGATTACCCTCGAGGTTGAAAGCTCT 81196712 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| ||||| || || || || || Sbjct 81196711 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCCCCAGACCAG 81196652 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 || || |||| | || || || ||||||||||| | | | ||| ||| ||||| || Sbjct 81196651 CAACGATTGATCTTCGCTGGAAAACAACTCGAAGACGGCCG-AACTCTAGCTGATTACAA 81196593 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||| || || || || || | ||||| || Sbjct 81196592 CATCCAGAAGGAGTCAACTCTCCATTTGGT 81196563 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/143 (73%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 ||||||||||| || || || || |||||||| | || | | || |||||| | || Sbjct 129284189 GACAAAGAAGGTATCCCACCAGACCAACAGAGGTTAATCTTTGCTGGGAAGCAATTAGAG 129284130 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| ||| || || || ||||| || |||||||| ||| ||||| | || || Sbjct 129284129 GATGGGCGAACACTCGCTGACTACAACATCCAGAAAGAATCAACACTTCATCTTGTTTTG 129284070 Query 24204 AGATTGAGAGGAGG-ACTATAAT 24225 |||||||||||||| ||||| || Sbjct 129284069 AGATTGAGAGGAGGAACTATGAT 129284047 >seq17 Length=214723238 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | || || ||||| |||| || || |||| || | || ||||| | Sbjct 210026452 CAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATAACGTTGGAGGTCGAATC 210026393 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | |||||| ||||| | || || ||||| |||||||||||||| || || || Sbjct 210026392 CTCCGACACAATCGACAACGTGAAGGCCAAGATCCAAGACAAAGAAGGCATCCCACCGGA 210026333 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATT 24165 || ||| | || || | || ||| || || |||||||| | ||||| | | ||| || | Sbjct 210026332 CCAGCAGCGGCTCATCTTCGCCGGAAAACAGCTCGAAGACGGCAGAACCCT-AGCGGACT 210026274 Query 24166 ATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 | ||||| || || || || || | ||||| |||||| Sbjct 210026273 ACAACATCCAGAAGGAGTCAACGCTCCATTTGGTGTTA 210026236 >seq16 Length=188620566 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | || ||||| | || ||| | ||||| ||| | Sbjct 29321962 ATGCAGATCTTCGTCAAAACTCTCACCGGAAAGACAATCACCCTTGAAGTTGAGAGCTCT 29321903 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | |||||| || || ||||| ||||| || || || || || Sbjct 29321902 GACACCATTGACAATGTCAAAGCTAAAATCCAAGACAAGGAAGGTATTCCACCGGACCAG 29321843 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | || || ||||| ||||| |||| | ||| | | |||||| ||| Sbjct 29321842 CAGAGGCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGAACCTTGGCCGATTACAAC 29321783 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || ||||| || | || | || | | ||||||||||| Sbjct 29321782 ATCCAGAAGGAATCCACTCTGCACCTTGTTCTCCGGTTGAGAGGAGG 29321736 >seq14 Length=174509413 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/137 (75%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 ||||||||||| || || || || |||||||| |||||| || || ||||| | || Sbjct 97878023 GACAAAGAAGGTATCCCACCAGACCAACAGAGGTTGATTTTCGCTGGAAAGCAGTTAGAG 97878082 Query 24144 GATGACAGAA-ACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGT 24201 |||| |||| || | || ||||| ||||| || ||||| || ||| ||||| | || Sbjct 97878083 GATGGAAGAACACTT--GCTGATTACAACATCCAGAAAGAGTCAACACTTCATCTTGTTC 97878140 Query 24202 TAAGATTGAGAGGAGGA 24218 | ||||||||||| ||| Sbjct 97878141 TGAGATTGAGAGGCGGA 97878157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429927993516840