Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq15 98.7 8e-16 seq1 91.5 1e-13 seq14 84.2 2e-11 seq3 82.4 6e-11 >seq15 Length=171247636 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||| ||||| || ||||| || || ||||| || | ||| || | | Sbjct 26151395 ATGCAGATTTTCGTCAAGACTCTCACTGGGAAGACCATCACTTTGGAAGTTGAAAGCTCC 26151336 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| |||| || || ||| ||| ||||||||||| |||| || || Sbjct 26151335 GACACCATTG-ACAATGTGAAGGCAAAGATTCAAGATAAAGAAGGGATCCCGCCAGACCA 26151277 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || ||||| | ||| || || ||| | ||||| | | |||| | ||||| || || Sbjct 26151276 GCAGAGGCTTATCTTTGCAGGGAAGCAACTTGAAGACGGCCGAACCTTAGCCGACTACAA 26151217 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTG 115495 |||||| || ||||| ||| | ||| ||||| Sbjct 26151216 CATTCAGAAGGAGTCCACTCTTCATTTGGTG 26151186 >seq1 Length=153905722 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAA--ACGGAGTCCA 115343 ||||| || ||||| ||||||||||| ||||| || || || | ||| | |||| | Sbjct 17864346 ATGCAGATCTTTGTTAAAACGCTCACCGGAAAGACAATCACTCTTGAAGTAGAGAGTTC- 17864404 Query 115344 GCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 |||| || | ||||| || ||| ||||| || |||||||| | || || Sbjct 17864405 -TGACA-TGATCGACAATGTCAAAGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGAC 17864462 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||| || || || | || || || ||| | ||||||| || |||| |||| ||||| Sbjct 17864463 CAGCAGAGGCTGATCTTCGCCGGAAAGCAACTCGAAGATGGCAGAACCTTGGCGGATTAC 17864522 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGT 115494 ||||| || || ||||| ||| | ||| |||| Sbjct 17864523 AACATCCAGAAGGAGTCCACTCTTCATCTGGT 17864554 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| || ||| | || ||||| ||||| || | ||| ||| | Sbjct 17864802 ATGCAGATCTTTGTTAAGACGTTGACTGGAAAGACCATCACTCTTGAAGTTGAGAGCTCG 17864861 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || ||| |||| || || ||| ||| ||||||||||| |||| || || Sbjct 17864862 GATACGATTG-ACAATGTCAAGGCAAAGATTCAAGATAAAGAAGGGATCCCACCAGACCA 17864920 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 || || || || | ||| || ||||| | ||||||| || |||| |||||||| Sbjct 17864921 ACAGAGGCTGATCTTTGCCGGTAAACAGCTGGAAGATGGGCGGACTTTGGCGGATTATAA 17864980 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||| || || ||||| | ||| ||||| |||| ||| |||| || Sbjct 17864981 CATTCAGAAGGAATCTACGCTTCATTTGGTGCTGAGGTTGAGAGGTGG 17865028 >seq14 Length=174509413 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 ||||||||||| | || ||||||||||| ||||||| ||| || || || || ||| Sbjct 117470535 GATAAAGAAGGTATTCCACCGGATCAGCAAAGGCTTATTTTTGCTGGGAAGCAGTTGGAA 117470476 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTT 115497 |||| | || |||| |||||||| ||||| || |||| |||| | ||| |||| || Sbjct 117470475 GATGGGAGGACTTTGGCGGATTATAATATTCAGAAGGAGTTTACTTTGCATCTGGTTTT 117470417 >seq3 Length=168485022 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 115282 AAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTC 115341 ||| ||||| || ||||||||||| || || |||||||| || || | ||| || Sbjct 118896083 AAACATGCAGATCTTTGTCAAAACCCTAACCGGAAAAACAATCACTCTAGAAGTCGAAAG 118896024 Query 115342 CAGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTG 115400 | |||||| | ||||| || ||| || || || |||||||| |||| | Sbjct 118896023 CTCCGACAC-AATCGACAACGTCAAAGCCAAGATCCAAGACAAAGAAGGAATCCCACCGG 118895965 Query 115401 ATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATT 115460 |||| ||| | || || | || || ||||| | ||||| | || |||| | ||||||| Sbjct 118895964 ATCAACAACGTCTCATCTTCGCCGGAAAACAGCTCGAAGAGGGCAGAACCCTAGCCGATT 118895905 Query 115461 ATAACATTCAAAAAGAGTCTAC 115482 | ||||| |||||||| || || Sbjct 118895904 ACAACATCCAAAAAGAATCCAC 118895883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425336079031360