Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq15 221 2e-52 seq14 208 1e-48 seq9 98.7 1e-15 >seq15 Length=171247636 Score = 221 bits (244), Expect = 2e-52 Identities = 431/630 (68%), Gaps = 14/630 (2%) Strand=Plus/Plus Query 32649 TTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTG 32708 ||| ||| ||| || ||||||||||| || | ||||||||||| || || ||||| Sbjct 39549694 TTATACAGCAAGCAAGCGAAATCGCAATGCAAACCCTCGTCTCGCGATATCAACTCGTTC 39549753 Query 32709 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT 32768 || ||||| | || ||||| | |||||||| || | ||| || || | | |||| | | Sbjct 39549754 GAGAACGTTAAACCCGGCATCAACCCACGCTTCTTCAACCAGAAAATAG-CACAAAAGCT 39549812 Query 32769 -CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 32827 ||||||||||| |||||||| || ||||||||||| | ||||||| || | || Sbjct 39549813 ACCAGAAAAGAATATTCCTTCAACACAGGCAAAGGCAATTATTCTCTCTGCAAA--CGAT 39549870 Query 32828 GCTGTCATGT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTC 32885 ||| || |||||||| ||||||| ||||| || | |||||| || |||||| Sbjct 39549871 TCTGAACCGTCGATCCACTTCATCGCCCAATTCGCCTTTTTCTGTACACATGGTATTGTC 39549930 Query 32886 TCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAA 32945 || |||||| || | | |||||||||| | |||||| | || | || | || Sbjct 39549931 TCAATAGCACGGAACAAACGGTTTTTTTCAACAGAATCTTTGATGTACGATTCCAACAGC 39549990 Query 32946 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTA 33005 | ||| |||||||| || || || || ||||| || |||||||| ||||| ||| | Sbjct 39549991 AAACTGTACATTTCAGAGTGGATATTCTCAATCGCGATTTGAAAGCCGTAAAAGGCACGC 39550050 Query 33006 GCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCG 33065 ||||||| |||||||||||| | || || | || | ||||| || || ||| Sbjct 39550051 GCCTCGGAGATCTGTACTTCTTTCATGAAGCGGCCAGCGAGGTTTTCCAATACAATGCCG 39550110 Query 33066 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT 33125 || || || || || || | ||| || | || || | ||||| ||| || Sbjct 39550111 TCTGATGCAGCGAAGAAGGCGAGTACGTGAGTAATGAAGTGACGTTCGT----TGTCGGT 39550166 Query 33126 T---TATTCCAATCATTGAT-ATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 33181 | | ||| | ||| | |||| |||| || |||||||| | ||||| ||||| Sbjct 39550167 TAAGGAGTCCCAGTGTTGTTGGTCTTGTGATAAGTCGACTTCTTCTGCGGTCCAGAATGA 39550226 Query 33182 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241 || || |||||||| ||||| | |||||| | | ||||| ||||| || || || Sbjct 39550227 GGCTTCGGCCTTTTTGTACATTTCCCAGATTTGTGGGTATTGGATTGGGAACATGCAGAA 39550286 Query 33242 TCTATTTGGATTTTTTGCAAGGATTGGTTC 33271 ||| | || ||| | |||||||| || Sbjct 39550287 TCTGTCGGGGTTTGGGGTTAGGATTGGGTC 39550316 Score = 113 bits (124), Expect = 6e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 ||||| || || | |||| ||| || | ||| | || | || |||||| ||||| ||| Sbjct 145647816 CCTCCTTGGTCAACATATCGAGCAGTATCGTTAAAGACACGCAGCATTGGGATAATGCCA 145647875 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 |||||||||||||| || || || || |||||| | | ||| |||||| ||| || Sbjct 145647876 TTGGATGTACCATTTGTTCCACGTATGTAACTTCCAGTTGAACGGATATTATGAATAGAG 145647935 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | ||| ||||| ||||| ||| ||| | || ||| || || ||||| || ||| Sbjct 145647936 ACACCAATTCCACCTGCTGATTTGCTGATAACAGCACATTCCTTCAAAGTATCGTATATG 145647995 Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 ||||| || ||||| || ||||| | || ||||||||| Sbjct 145647996 CCCTCAATGCTATCGTCTTTCATGCATAACAGGAAACAGCTA 145648037 Score = 89.7 bits (98), Expect = 7e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 || || ||||| |||| ||| |||||||| ||||| ||||| | | || | | || Sbjct 145648153 GTCCCTGCATTGAATAGGGTGGGAGAAGCATGAGTGAACCACCTCTGTGACATCAAATGA 145648212 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || |||| || | || || || || || ||||| || || | || | ||| ||| Sbjct 145648213 TAAGTCTTGATTACCGAATCAATGTCATCTTTGTGAATCCCAACCGAAACCCTCATCAAC 145648272 Query 63587 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63646 || || |||||||||||||| | ||| || ||||| | || || | || | Sbjct 145648273 ATATGTTGAGGTCTTTCAACAACCTTCCCTCCAATCTTCAATAGATATGACCTCTCAAGG 145648332 Query 63647 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||||||||||||||||| | || |||||| || ||||| ||||| Sbjct 145648333 GTTTTAAAACCAAAATAATCATAATCAAAGTCCCGATCGTATATAAT 145648379 >seq14 Length=174509413 Score = 208 bits (230), Expect = 1e-48 Identities = 403/587 (69%), Gaps = 12/587 (2%) Strand=Plus/Minus Query 32655 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 32714 ||||| || |||||||||||||||| ||| || |||| ||||||||||| || || Sbjct 142133087 ATCAAGCACGCGAAATCGCAGTGTAAACCTTCATCTCGTGAGATTAATTCGTTTGAGAAT 142133028 Query 32715 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGA 32773 || ||||| ||||||| || |||||||| ||||| ||||| | | || || ||| || Sbjct 142133027 GTCAGTCCCGGCATTAACCCGCGCTTTTTCAGCCAGAATATCG-CACAGAAGCTTCCTGA 142132969 Query 32774 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCGC 32829 ||||| |||||||| || ||||| ||||| | | |||| || ||| ||| | Sbjct 142132968 GAAGAATATTCCTTCGACGCAGGCAAAAGCAATGATCCGCTCTGCA-AACGATTCGGATC 142132910 Query 32830 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 32889 ||| ||||| || | ||||||| ||| ||||| | | || || || || || | Sbjct 142132909 CGTC---GATCCATTTCAGCGCCCAATTGGCTTTCTTCTGGATGCAGGGGATGGTTTCAA 142132853 Query 32890 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 32949 | || ||| ||| || |||||| | |||||| | || | || | || |||| Sbjct 142132852 TCGCGCGAAATAGACGATTCTTTTCAGTGGAATCTTTGATGTAGGATTCGAGTAACAGAC 142132793 Query 32950 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA-GCATCTAGCC 33008 | ||||| || || || |||||||||||||| |||||||| |||||||| ||| | ||| Sbjct 142132792 TGTACATCTCGGAGTGGATGTTTTCAATGGCGATTTGAAAGCCGTAGAACGCA-CGCGCC 142132734 Query 33009 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 33068 |||| ||||| ||||| | ||||| | || | ||||| || || ||||| Sbjct 142132733 TCGGCGATCTGGACTTCCTTCATGAATCGGCCGGCGAGGTTTTCGAGGACGATGCCGTCT 142132674 Query 33069 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 33128 || || || || || | || || | || || | |||| | ||||| | Sbjct 142132673 GAAGCGGCGAAGAAGGCGAGGACGTGAGTGATGAAGTGGCGTTCGCCGTCGGTTAGGGTT 142132614 Query 33129 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 33188 | ||| | | | |||| || | || |||||||| ||||||| ||||| ||||| Sbjct 142132613 TCCCATTGACGGTGGTCTTGTGAGAGGTCTACTTCTTCTGCTGTCCAGAATGAGGCCTCG 142132554 Query 33189 GCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 33235 || ||||| ||||| | |||||| | | ||||| ||||| || || Sbjct 142132553 GCTTTTTTGTACATTTCCCAGATTTGGGGGTATTGGATTGGGAACAT 142132507 >seq9 Length=209865144 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 || || ||||| || | ||| |||||||| || || ||||| ||| || | | || Sbjct 123174741 GTCCCTGCATTGAAGAGGGTGGGAGAAGCATGTGTGAACCACCTTTGTGACATCAAATGA 123174800 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || |||| || | || || || || || ||||| || ||||| || | ||| | | Sbjct 123174801 TAAGTCTTGATGACAGAATCAATGTCATCTTTGTGAATCCCAACTGCAACCCTCATCAGC 123174860 Query 63587 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63646 || || ||||||||||| || | ||| || || ||||||| ||| ||| | || | Sbjct 123174861 ATATGTTGAGGTCTTTCCACAACCTTCCCTTTGATCTTCAACAGGTATGATCTCTCAAGT 123174920 Query 63647 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 |||||||| |||||||| | || |||||| || ||||| || || Sbjct 123174921 GTTTTAAAGCCAAAATAATCATAATCAAAGTCCCGATCGTATATGAT 123174967 Score = 93.3 bits (102), Expect = 5e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 ||||| ||||| | || | ||||| | || | || | ||||||||| ||||| ||| Sbjct 123174121 CCTCCTTGATCAACATAACGGGCGGTATCGTTGAAGACACGCAACATTGGGATAATGCCA 123174180 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 |||||||||||||| ||||| || || || || | | |||||| ||| || || Sbjct 123174181 TTGGATGTACCATTTGTCCCGCGTATGTAACTCCCTGTCGAACGAATGTTATGAACAGAA 123174240 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | ||| || || ||||| ||| ||| | || ||| || || || ||||| ||| Sbjct 123174241 ACACCAATCCCACCTGCTGATTTGCTGATAACAGCACATTCCTTCAAAGTGTCATATATG 123174300 Query 63407 CCCTCTATACTATCATCCATCATG 63430 || || || |||||||| ||||| Sbjct 123174301 CCTTCAATGCTATCATCTTTCATG 123174324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633619897628800