Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq1 107 1e-18 seq15 95.1 9e-15 seq12 91.5 1e-13 seq5 91.5 1e-13 >seq1 Length=153905722 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| |||| || || || || || ||||| || | ||| || | | Sbjct 17864802 ATGCAGATCTTTGTTAAGACGTTGACTGGAAAGACCATCACTCTTGAAGTTGAGAGCTCG 17864861 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | | || | ||| ||| ||| |||||||| || | || | ||||| Sbjct 17864862 GATACGATTGACAATGTCAAGGCAAAGATTCAAGATAAAGAAGGGATCCCACCAGACCAA 17864921 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || |||||||| || ||||| || |||||| ||| |||| ||||| || Sbjct 17864922 CAGAGGCTGATCTTTGCCGGTAAACAGCTGGAAGATGGGCGGACTTTGGCGGATTATAAC 17864981 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||||||||||||||||| |||||| |||| Sbjct 17864982 ATTCAGAAGGAATCTACGCTTCATTTGGT 17865010 >seq15 Length=171247636 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | || || | || || || ||||| || ||||| ||| | | Sbjct 26151395 ATGCAGATTTTCGTCAAGACTCTCACTGGGAAGACCATCACTTTGGAAGTTGAAAGCTCC 26151336 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| ||| ||| |||||||| || | || | |||| Sbjct 26151335 GACACCATTGACAATGTGAAGGCAAAGATTCAAGATAAAGAAGGGATCCCGCCAGACCAG 26151276 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| ||||||||||| || || ||||| ||||| ||| | ||||| ||||| Sbjct 26151275 CAGAGGCTTATCTTTGCAGGGAAGCAACTTGAAGACGGCCGAACCTTAGCCGACTACAAC 26151216 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||| || ||||||||| |||| | ||| | ||||| || Sbjct 26151215 ATTCAGAAGGAGTCCACTCTTCATTTGGTGCTTCGTCTTCGAGGTGG 26151169 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | || || | || || || ||||| || ||||| ||| | | Sbjct 26151623 ATGCAGATTTTCGTCAAGACTCTGACCGGGAAGACCATCACGTTGGAAGTCGAAAGCTCT 26151564 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || ||||| || || || |||||||| | || | ||||| Sbjct 26151563 GATACCATCGACAATGTTAAGGCCAAGATCCAGGACAAAGAGGGGATCCCACCAGACCAA 26151504 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || ||||||||||| || || || || ||| | || | |||||||||||| Sbjct 26151503 CAGAGGCTGATCTTTGCTGGTAAGCAGCTTGAGGATGGACGCACCCTTGCCGATTACAAT 26151444 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||||||||| || || ||| |||| | ||| | || || || Sbjct 26151443 ATCCAGAAGGAATCCACCCTCCATTTGGTGCTTCGTCTTCGCGGTGG 26151397 Score = 82.4 bits (90), Expect = 5e-11 Identities = 143/207 (69%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| |||| || ||||| || || || || || ||||| ||| | || Sbjct 34230960 ATGCAGATCTTTGTTAAGACTTTAACCGGAAAGACAATCACTTTGGAAGTTGAAAGCTCA 34231019 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || || | | || | ||| || || ||||||||||| | ||||| || Sbjct 34231020 GACACCATTGATAATGTCAAGGCTAAGATCCAAGATAAAGAGGGCATCCCACCTG---AC 34231076 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || ||| || | ||||||||||| ||||| || |||||| ||| | ||||| ||| Sbjct 34231077 CAGCAGCGATTGATCTTTGCTGGTAAACAGCTTGAAGATGGCCGTACTTTAGCCGACTAC 34231136 Query 22011 AATATTCAGAAGGAATCTACTCTTCAT 22037 || ||||||||||| || || || ||| Sbjct 34231137 AACATTCAGAAGGAGTCCACACTCCAT 34231163 >seq12 Length=166489593 Score = 91.5 bits (100), Expect = 1e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 ||||||||| || |||||||| || | ||||||||||||| ||| |||| ||||| Sbjct 131441798 CCAACAGAGGCTGATCTTTGCCGGTAGACAACTAGAAGATGGGCGGACTTTGGCGGATTA 131441857 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGT 22042 || ||||||||||||||||| |||||| |||| Sbjct 131441858 TAAAATTCAGAAGGAATCTACGCTTCATTTGGT 131441890 >seq5 Length=219053782 Score = 91.5 bits (100), Expect = 1e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 ||||||||| || |||||||| || | ||||||||||||| ||| |||| ||||| Sbjct 6351395 CCAACAGAGGCTGATCTTTGCCGGTAGACAACTAGAAGATGGGCGGACTTTGGCGGATTA 6351454 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGT 22042 || ||||||||||||||||| |||||| |||| Sbjct 6351455 TAAAATTCAGAAGGAATCTACGCTTCATTTGGT 6351487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358118130820912