Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq14 154 3e-32 seq15 141 2e-28 >seq14 Length=174509413 Score = 154 bits (170), Expect = 3e-32 Identities = 277/400 (69%), Gaps = 11/400 (3%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || |||||||||||||| || |||||||| ||| || ||||| ||| | | |||||| Sbjct 142132654 CTCGCCTTCTTCGCCGCTTCAGACGGCATCGTCCTCGAAAACCTCGCCGGCCGATTCATG 142132713 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCCATAGAGAA 42541 || || || ||| | |||||||| ||| ||||||||||| || || ||||| || || Sbjct 142132714 AAGGAAGTCCAGATCGCCGAGGCGCG-TGCGTTCTACGGCTTTCAAATCGCCATTGAAAA 142132772 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTG---CTCAACACGTACATCCTGGATCCCGTCGA 42598 | | ||||| ||| |||| || ||| ||| | | |||||| ||| || || Sbjct 142132773 CATCCACTCCGAGATGTA---CAGTCTGTTACTCGAATCCTACATCAAAGATTCCACTGA 142132829 Query 42599 GCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTG 42658 || | || || || || || || || ||||||||| ||||||| || | || Sbjct 142132830 AAAGAATCGTCTATTTCGCGCGATTGAAACCATCCCCTGCATCCAGAAGAAAGCCAATTG 142132889 Query 42659 GGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTAC 42718 |||||| || |||||||| | |||| | |||| | ||| || | | || ||| | Sbjct 142132890 GGCGCTGAAATGGATCGACGGATCCGA---ATCGTTTGCAGAGCGGATCATTGCTTTTGC 142132946 Query 42719 CGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA 42778 | |||||| || || |||||||| || |||| | || |||||||| || || Sbjct 142132947 CTGCGTCGAAGGAATATTCTTCTCAGGAAGCTTCTGTGCGATATTCTGGCTGAAAAAGCG 142133006 Query 42779 GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATC 42818 | || ||||| ||||| || ||||| |||||| | ||| Sbjct 142133007 CGGGTTAATGCCGGGACTGACATTCTCAAACGAATTAATC 142133046 >seq15 Length=171247636 Score = 141 bits (156), Expect = 2e-28 Identities = 298/444 (67%), Gaps = 3/444 (1%) Strand=Plus/Minus Query 42418 ACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGT 42477 || |||| ||||||||||| || || |||||||| || || ||||| || | | | Sbjct 39550138 ACGTACTCGCCTTCTTCGCTGCATCAGACGGCATTGTATTGGAAAACCTCGCTGGCCGCT 39550079 Query 42478 TCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAG 42537 |||||||||| || ||| || |||||||| ||| |||||||| || || || || | Sbjct 39550078 TCATGAAAGAAGTACAGATCTCCGAGGCGCGTGCCTTTTACGGCTTTCAAATCGCGATTG 39550019 Query 42538 AGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCG 42597 |||| | |||||||| ||||| ||| | | |||||||| ||| | || | Sbjct 39550018 AGAATATCCACTCTGAAATGTACAGTTTGCTGTTGGAATCGTACATCAAAGATTCTGTTG 39549959 Query 42598 AGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACT 42657 | ||| | ||||| || || ||||| || || || | |||| |||||| | | Sbjct 39549958 AAAAAAACCGTTTGTTCCGTGCTATTGAGACAATACCATGTGTACAGAAAAAGGCGAATT 39549899 Query 42658 GGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTA 42717 ||||| | || |||||||| || | || | |||| | ||||| | | |||||| Sbjct 39549898 GGGCGATGAAGTGGATCGACGGTTCAGA---ATCGTTTGCAGAGAGAATAATTGCCTTTG 39549842 Query 42718 CCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA 42777 || || || || || ||||| || || ||| | || |||||| | ||| || Sbjct 39549841 CCTGTGTTGAAGGAATATTCTTTTCTGGTAGCTTTTGTGCTATTTTCTGGTTGAAGAAGC 39549782 Query 42778 AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGC 42837 | || |||||| || | || ||||||||||| | || | |||||||| ||| Sbjct 39549781 GTGGGTTGATGCCGGGTTTAACGTTCTCGAACGAGTTGATATCGCGAGACGAGGGTTTGC 39549722 Query 42838 ATAGGGACTTTGCCTGCCTCCTGT 42861 || | || || || ||| | |||| Sbjct 39549721 ATTGCGATTTCGCTTGCTTGCTGT 39549698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944321163121280