Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq11 104 2e-17 seq1 93.3 3e-14 seq15 84.2 2e-11 seq12 84.2 2e-11 seq8 84.2 2e-11 seq4 82.4 6e-11 >seq11 Length=168460249 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 33916 AGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGCTCGTCG 33975 ||||| ||||||||||| ||||||||| ||||| ||||| ||||| || | || Sbjct 109472738 AGCACAAGATGAAGCGTAGACTCCTTCTGGATGTTATAATCCGCCAAAGTACGACCATCA 109472797 Query 33976 TCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCTTTGTCC 34035 ||||| || || |||||||| |||| |||||||| ||| ||| | || |||||| ||| Sbjct 109472798 TCCAACTGTTTTCCGGCAAAGATCAACCGCTGCTGGTCCGGCGGGATGCCCTCTTTATCC 109472857 Query 34036 ATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGTTATTGTT 34095 ||| || ||| | | | | |||| | | || || | ||| || || Sbjct 109472858 TGAATCTTGGCCTTGACGTTATCGATGGTATCCGAACTCTCCTCCTCCAACGTGATAGTC 109472917 Query 34096 TTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||||||| || || |||||||| |||||||| Sbjct 109472918 TTTCCGGTGAGGGTCTTCACAAATATTTGCAT 109472949 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 33916 AGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGCTCGTCG 33975 ||||| ||||||||||| ||||||||| ||||| ||||| ||||| || | || Sbjct 109718080 AGCACAAGATGAAGCGTAGACTCCTTCTGGATGTTATAATCCGCCAAAGTACGACCATCA 109718139 Query 33976 TCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCTTTGTCC 34035 || || || || |||||||| |||| |||||||| || ||| | || |||||| ||| Sbjct 109718140 TCTAACTGTTTTCCGGCAAAGATCAACCGCTGCTGGTCTGGCGGGATGCCCTCTTTATCC 109718199 Query 34036 ATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGTTATTGTT 34095 ||| || ||| | | | | | |||| | | || || | ||| || || Sbjct 109718200 TGAATCTTGGCCTTGACGTTATCGATAGTATCCGAACTCTCCACCTCCAACGTGATAGTC 109718259 Query 34096 TTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||||||| || || |||||||| |||||||| Sbjct 109718260 TTTCCGGTCAGGGTCTTCACAAATATTTGCAT 109718291 >seq1 Length=153905722 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | || || || ||||||||||| ||| ||||||||| ||||||||||| || Sbjct 17864573 ACCTCCACGGAGACGGAGGACCAGATGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGC 17864514 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 ||| || | || || | |||||| ||||| || ||||| | |||||| || || Sbjct 17864513 CAAGGTTCTGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGTGG 17864454 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT----AATGGAACTCACACTATCAGTAGATT 34075 | | ||||||| | | |||| |||| | || ||| | |||| | | Sbjct 17864453 AATACCTTCTTTGT-CTTGGATTTTAGCTTTGACATTGTCGATCA---TGTCAGAACTCT 17864398 Query 34076 CGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | ||| | || ||||| |||||||| || ||||| |||||||| ||||| Sbjct 17864397 CTACTTCAAGAGTGATTGTCTTTCCGGTGAGCGTTTTAACAAAGATCTGCAT 17864346 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||||| || |||||||| ||||||||| |||||||||||||| ||||| ||| Sbjct 17865028 CCACCTCTCAACCTCAGCACCAAATGAAGCGTAGATTCCTTCTGAATGTTATAATCCGCC 17864969 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || ||| | || |||| || || |||||||| ||||| | ||| || || Sbjct 17864968 AAAGTCCGCCCATCTTCCAGCTGTTTACCGGCAAAGATCAGCCTCTGTTGGTC 17864916 >seq15 Length=171247636 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| |||| || || ||||||| |||||| ||| |||||||||||||||||| || || Sbjct 26151168 ACCACCTCGAAGACGAAGCACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGC 26151227 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || ||| |||| || | |||||| || ||||| || || | |||||| || Sbjct 26151228 TAAGGTTCGGCCGTCTTCAAGTTGCTTCCCTGCAAAGATAAGCCTCTGCTGGTC 26151281 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| ||||| || || ||||||| |||||| ||| || ||||| |||||||||||||| Sbjct 26151624 ACCACCTCTGAGGCGGAGCACCAAATGAAGGGTGGATTCTTTCTGGATGTTGTAATCTGC 26151683 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 ||| || |||| || | ||||| || ||||| ||||| | ||| || || || Sbjct 26151684 CAAAGTACGACCGTCCTCAAGCTGCTTACCAGCAAAGATCAGCCTCTGTTGGTCTGGTGG 26151743 Query 34020 CACGCTCTCTTTGTC 34034 | | ||||||||| Sbjct 26151744 GATCCCCTCTTTGTC 26151758 >seq12 Length=166489593 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 ||||||| ||||||||| || || ||||||||| ||||||||||| || | || Sbjct 157664024 AGCCGCAACACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAATCCGCTAGGGTTCTG 157664083 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | || || ||||| || || || || ||||| ||| || | || || Sbjct 157664084 CCGTCTTCGAGCTGTTTTCCGGCGAAAATTAGCCGTTGCTGGTCCGGTGGAATGCCTTCC 157664143 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGTT 34089 |||||| || ||| ||| | | | | || | |||||| || | ||| Sbjct 157664144 TTGTCCTGGATCTTTGCCTTCACGTTGTCGATCGTGTCGGAGGATTCGACCTCCAACGTG 157664203 Query 34090 ATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 || || || || ||||| |||||||| ||||| |||||||| Sbjct 157664204 ATCGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATTTT 157664244 >seq8 Length=153252196 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || || || || || ||||||||| ||||||||||| ||||| || Sbjct 119540549 AGACGGAGGACAAGGTGGAGAGTTAGCTCCTTCTGGATGTTGTAATCAGCCAAGGTACGG 119540490 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTG 34010 ||||| ||||||||||| ||||| || |||| ||||||||| Sbjct 119540489 TCGTCTTCCAATTGCTTTCCGGCGAAGATCAAGCGCTGCTG 119540449 >seq4 Length=178899001 Score = 82.4 bits (90), Expect = 6e-11 Identities = 103/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| ||||||| || ||||||||| || || |||||| || ||||||||||| | Sbjct 81195860 ACCTCCCCTCAGCCTCAACACCAGATGCAGAGTCGACTCCTTTTGGATGTTGTAATCCG- 81195918 Query 33960 CAATTGTC--GCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACC 34017 ||| ||| || |||| ||||| || || || ||||| || || | |||||| ||| Sbjct 81195919 CAAGAGTCCTGC-CGTCTTCCAACTGTTTACCCGCAAAGATGAGCCTCTGCTGGTCCGGT 81195977 Query 34018 GGCACGCTCTCTTTGTCC 34035 || | | ||| |||||| Sbjct 81195978 GGGATACCCTCCTTGTCC 81195995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397055005705456