Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq12 86.0 1e-11 >seq12 Length=166489593 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 243476 AGCTACCATTCGAAACGGTCAAACAAATCAT-CACAGAAGCAGTTGAAAACGAAAAGGAA 243534 |||| || || |||| |||| | |||| | ||| ||||||||||||| || | ||| Sbjct 16892678 AGCTTCCTTTGGAAAAGGTCGATGAAATAGTGCAC-GAAGCAGTTGAAATAGAGACCGAA 16892620 Query 243535 TTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAG 243594 ||| |||| || | |||||||| |||||||||||||||| | ||||||| | || Sbjct 16892619 TTCGTTTGTGAGTCGCTTCCATGCGCGCTTATTGGCATGAACGCGACACTCATGAGCCAA 16892560 Query 243595 TACATCGAATTCGTAGCCGACCGC 243618 ||||| | || || || |||||| Sbjct 16892559 TACATAAAGTTTGTTGCTGACCGC 16892536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102858408366800