Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq14 127 2e-24 seq17 118 1e-21 seq15 116 4e-21 >seq14 Length=174509413 Score = 127 bits (140), Expect = 2e-24 Identities = 185/261 (71%), Gaps = 3/261 (1%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| | ||| || || || ||||| | ||| || ||||| |||||| ||||| | || Sbjct 142133067 GTGTAAACCTTCATCTCGTGAGATTAATTCGTTTGAGAATGTCAGTCCCGGCATTAACCC 142133008 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 ||||| |||| |||||| |||||||| || || |||||||| ||||| || || || Sbjct 142133007 GCGCTTTTTCAGCCAGAATATCGCACAGAAGCTTCCTGAGAAGAATATTCCTTCGACGCA 142132948 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 || || |||| || ||||| ||||| || || | ||| | ||| |||| ||| Sbjct 142132947 GGCAAAAGCAATGATCCGCTCTGCAAACGATTCGGA---TCCGTCGATCCATTTCAGCGC 142132891 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 126297 ||| | || || |||| ||| || |||| ||| | ||||| ||| || ||||| Sbjct 142132890 CCAATTGGCTTTCTTCTGGATGCAGGGGATGGTTTCAATCGCGCGAAATAGACGATTCTT 142132831 Query 126298 TTCTGATGGATCTTTGATGTA 126318 ||| | | |||||||||||| Sbjct 142132830 TTCAGTGGAATCTTTGATGTA 142132810 Score = 96.9 bits (106), Expect = 4e-15 Identities = 192/281 (68%), Gaps = 10/281 (4%) Strand=Plus/Plus Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGG 10935 ||| |||||||| || ||||| | ||||| || |||||||| | ||||||||| | Sbjct 14537972 AAAACCATCCATTTCCGTCAACAACTGATTAATCGTTTGTTCCCTCTCATCATTCCCACC 14538031 Query 10936 -CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 10994 | || |||||||| | ||| |||| || || || || ||||| || || || || | Sbjct 14538032 ACCTAA-ACCCGCACCTCTCTGCCTACCAACTGCATCTATCTCATCAATAAACACAATGC 14538090 Query 10995 ACGG----TTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACA 11050 |||| || |||| | | ||||| | ||| | ||||| ||||| ||| Sbjct 14538091 ACGGCGCTTTCGATTTCGCCTTC----TCAAACAAATCCCTAACTCTAGAAGCACCAACA 14538146 Query 11051 CCCACAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCA 11110 |||||||||| ||| ||||| | | || | |||| || || || || | ||| Sbjct 14538147 CCCACAAACAATTCGACAAATTCCGAAGCAGCACATGAGAAAAACGGCACTCCAGCCTCA 14538206 Query 11111 CCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 ||||| | ||| || || | ||||||||||| || ||||| Sbjct 14538207 CCCGCAACGGCCCGAGCTAAAAGGGTCTTCCCGGTTCCAGG 14538247 >seq17 Length=214723238 Score = 118 bits (130), Expect = 1e-21 Identities = 243/359 (68%), Gaps = 2/359 (1%) Strand=Plus/Minus Query 10834 GCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGT 10893 |||||| || ||||| | |||| ||| || || | || || |||||||| ||||| Sbjct 138181733 GCGGTTGGTGGCCGCAACTACAATGATACCTGTGTTCCCTTCGAACCCATCCATTTCAGT 138181674 Query 10894 CAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCACCCGCACTGCG 10953 ||| || || || | |||||||| | |||||||||| | | ||||| | | Sbjct 138181673 CAAAAGCTGGTTAAGCGTTTGTTCTCTTTCATCATTCCCTCCTCCAATACCCGTTCCTCT 138181614 Query 10954 TTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGC 11013 ||| | || || || ||||||||||| | || |||||||||||| ||| || || Sbjct 138181613 TTGTCTCCCAACCGCATCAATTTCATCAACAAATACGATACACGGTGCATTCTCTTTTGC 138181554 Query 11014 AACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATT 11073 || || | |||||| || || |||||| ||||| ||||||||||| ||||| | Sbjct 138181553 CTTTTTGAACAGATCTCGAACCCTTGAGGCACCAACACCAACAAACATTTCAACAAATTC 138181494 Query 11074 GGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGA 11132 | | ||| || | || ||||||||| | |||||| || || ||| || | | Sbjct 138181493 CGAACCTGAA-ATGGAGAAGAAGGGGACACCTGCTTCACCAGCAATAGCTTTAGCCAATA 138181435 Query 11133 GGGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCA 11191 | || ||||| || || || || | ||||| |||| ||| || || |||||| Sbjct 138181434 GTGTTTTCCCTGTTCCTGGGGGACCCACAAGAAGAACACCCTTTGGAATTCTAGCACCA 138181376 Score = 107 bits (118), Expect = 2e-18 Identities = 170/239 (71%), Gaps = 6/239 (3%) Strand=Plus/Plus Query 10835 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 10894 ||||| || ||||| | |||| ||| ||||| | ||||| || ||||| || ||| Sbjct 143474356 CGGTTGGTAGCCGCAACTACAATGATACCCGTGTTTCCTTCAAACCCGTCCATTTCGGTC 143474415 Query 10895 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATAC--CACCCGCACTGC 10952 || || || || | |||||||| |||||||||||| | || | | |||||| | | Sbjct 143474416 AAAAGCTGGTTAAGCGTTTGTTCTCGTTCATCATTCCC--GCCTCCGATACCCGCCCCTC 143474473 Query 10953 GTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTC-ACGG 11011 ||| | || || || || |||||||| | || || ||||||||| ||| || | Sbjct 143474474 TTTGTCTCCCAACCGCATCGATTTCATCAACAAACACAATACACGGTGCATTCTCTTTCG 143474533 Query 11012 GCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAA 11070 | ||| ||| | || ||||||||| |||||| ||||| |||||||| || ||||| Sbjct 143474534 CCTTCTTGAAA-AGGTCCCGGACTCTCGAGGCACCAACACCAACAAACATCTCAACAAA 143474591 >seq15 Length=171247636 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 9/212 (4%) Strand=Plus/Plus Query 126064 ACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTT 126123 ||||||||| || || || | || |||||||| | || ||||| | || ||||| Sbjct 39549726 ACCCTCGTCTCGCGATATCAACTCGTTCGAGAACGTTAAACCCGGCATCAACCCACGCTT 39549785 Query 126124 CTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAA 126183 ||||||||||||||| |||||||| ||| || ||||| ||||| || ||||| || || Sbjct 39549786 CTTCAACCAGAAAATAGCACAAAAGCTACCAGAAAAGAATATTCCTTCAACACAGGCAAA 39549845 Query 126184 CGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTG---TGTCAAACCACTTCATCGCCCA 126240 |||| | | ||| ||||| ||| | || ||| | ||||||||||||||| Sbjct 39549846 GGCAATTATTCTCTCTGCAAA------CGATTCTGAACCGTCGATCCACTTCATCGCCCA 39549899 Query 126241 CTGCGCCTTTTTCTCGATACACGGGACGGTCT 126272 | ||||||||||| | ||| || | |||| Sbjct 39549900 ATTCGCCTTTTTCTGTACACATGGTATTGTCT 39549931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597342190546240