Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq4 123 3e-23 seq17 100 3e-16 seq16 100 3e-16 seq15 91.5 2e-13 seq12 89.7 6e-13 seq11 87.8 2e-12 >seq4 Length=178899001 Score = 123 bits (136), Expect = 3e-23 Identities = 169/232 (73%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| || | | |||||||| ||||| || ||||||||| || |||||||| || Sbjct 81195860 ACCTCCCCTCAGCCTCAACACCAGATGCAGAGTCGACTCCTTTTGGATGTTGTAATCCGC 81195919 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||||| |||| || | ||| ||||| || || ||||| | ||||||||| | ||| Sbjct 81195920 AAGAGTCCTGCCGTCTTCCAACTGTTTACCCGCAAAGATGAGCCTCTGCTGGTCCGGTGG 81195979 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCG---CTCGATT 42156 | | |||||||||| ||| ||| ||| | ||| | | | |||||| ||| | Sbjct 81195980 GATACCCTCCTTGTCCTGGATCTTTGCTTTCA-CGTTGTCGATAGTGTCGGAGCTC---T 81196035 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || | |||||||| || || || | ||||| |||||||||||||| Sbjct 81196036 CGACCTCCAAGGTGATGGTCTTACCGGTCAAGGTCTTAACAAAGATTTGCAT 81196087 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||| | || |||||||||||| |||||||| || ||||||| |||| || Sbjct 81196335 ACCAAATGAAGAGTTGACTCCTTTTGAATGTTGTAATCGGCAAGAGTCCTGCCGTCCTCC 81196394 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 | ||||||||||||||| || | || ||| ||||| | ||| | | ||||||||| | Sbjct 81196395 AACTGCTTACCAGCGAAGATCAATCTCTGTTGGTCTGGTGGGATACCCTCCTTGTCTTGG 81196454 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || || |||| | | | |||||| ||| || || | || || || ||| Sbjct 81196455 ATCTTGGCCTTGACATTATCGATGGTGTCGGAGCTTTCGACCTCAAGGGTAATCGTCTTG 81196514 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || ||||| || || || ||||||||||| Sbjct 81196515 CCGGTTAGGGTTTTGACGAAGATTTGCAT 81196543 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||| || |||||||| |||| || || |||| || | |||||||| ||||| Sbjct 81196124 CTCCTTTTGGATGTTGTAATCGGCCAAGGTGCGGCCGTCTTCCAATTGCTTACCGGCGAA 81196183 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || || ||||||||||| | ||| | | |||||||| | ||| | |||| ||||| Sbjct 81196184 GATCAGACGCTGCTGGTCTGGTGGGATACCCTCCTTGT-CTTGAATCTTTGCTTTGACGT 81196242 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || ||| ||| || || | |||||||| || || || | ||||| | Sbjct 81196243 TATCGATGGTATCGGAGCTTTCGACCTCAAGGGTGATGGTCTTACCAGTCAAAGTCTTCA 81196302 Query 42196 CAAAGATTTGCAT 42208 ||||||||||||| Sbjct 81196303 CAAAGATTTGCAT 81196315 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||| | || |||||| || || ||||||||||| ||||| || |||| || Sbjct 81196563 ACCAAATGGAGAGTTGACTCCTTCTGGATGTTGTAATCAGCTAGAGTTCGGCCGTCTTCG 81196622 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 || || || |||||||| || | ||| |||||||| | || | | |||||||| | Sbjct 81196623 AGTTGTTTTCCAGCGAAGATCAATCGTTGCTGGTCTGGGGGGATTCCTTCCTTGTCTTGG 81196682 Query 42120 ATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 42175 || || |||| ||| | | | ||||| ||| ||| || |||| || || || Sbjct 81196683 ATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGAGCT---TTCAACCTCGAGGGTAATCGT 81196738 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| ||||| || || |||||||| ||||| Sbjct 81196739 CTTGCCAGTTAGGGTTTTGACAAAGATCTGCAT 81196771 Score = 86.0 bits (94), Expect = 7e-12 Identities = 139/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| ||||||| || || |||| || | ||||| ||||| || Sbjct 81196808 CTCCTTCTGGATGTTGTAGTCAGCCAAGGTACGGCCGTCTTCCAATTGCTTTCCAGCAAA 81196867 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | |||||||||||| | || | | |||||||| ||| || |||| ||| Sbjct 81196868 GATCAATCGCTGCTGGTCAGGGGGAATCCCTTCCTTGTCTTGGATCTTAGCCTTGA-CGT 81196926 Query 42137 CG-CCACCGTGTCG---CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | |||||| ||| || || |||| |||||||| || || || || |||| Sbjct 81196927 TGTCGATGGTGTCGGAACTC---TCGACCTCGAGAGTGATGGTCTTACCAGTGAGAGTCT 81196983 Query 42193 TTACAAAGATTTGCAT 42208 | || ||||||||||| Sbjct 81196984 TAACGAAGATTTGCAT 81196999 >seq17 Length=214723238 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 || ||||||||||| | || |||||| || || ||||| || || || || | || Sbjct 210026234 CGTAACACCAAATGGAGCGTTGACTCCTTCTGGATGTTGTAGTCCGCTAGGGTTCTGCCG 210026293 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || ||||| || || ||||| ||||| ||||||||||| | ||| | || || ||| Sbjct 210026294 TCTTCGAGCTGTTTTCCGGCGAAGATGAGCCGCTGCTGGTCCGGTGGGATGCCTTCTTTG 210026353 Query 42114 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 || ||| || || | ||| | | | |||||| ||||| || || | ||| || Sbjct 210026354 TCTTGGATCTTGGCCTTCA-CGTTGTCGATTGTGTCGGAGGATTCGACCTCCAACGTTAT 210026412 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || || |||||||| || || || ||||| ||||| || Sbjct 210026413 CGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 210026451 >seq16 Length=188620566 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || || | |||||| | ||||| || ||||||||||||||||||||||| Sbjct 106906668 ACCACCCCTCAACCTCAACACAAGATGCAGAGTCGATTCCTTTTGAATATTGTAATCAGC 106906609 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||| || ||| | || || |||||||| |||||||| || | | ||||||||| | ||| Sbjct 106906608 CAGCGTACGCCCATCCTCGAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCCGGTGG 106906549 Query 42101 CACGCTCTCCTTGTC 42115 | | |||||| || Sbjct 106906548 AATCCCCTCCTTATC 106906534 Score = 86.0 bits (94), Expect = 7e-12 Identities = 149/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||| | || |||||| || || ||||| ||||||||||| || | || || Sbjct 29321526 ACCAAATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGAGTACGGCCATCTTCC 29321585 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 | ||| || ||||| || || | | ||||||||| | ||| | | |||||| | | || Sbjct 29321586 AACTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCCTTAT-CTTG 29321644 Query 42120 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGA---TTCCACATCGACCGTGATGGT 42175 | | || | ||||| | | | ||||| ||| ||| || || | |||||||| Sbjct 29321645 AATCTTAGCTTTGACATTGTCAATGGTGTC---CGAACTTTCAACCTCCAAAGTGATGGT 29321701 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || | ||||| |||||||| ||||| Sbjct 29321702 CTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 29321734 >seq15 Length=171247636 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | || | ||||||||| | ||| || || || || |||||||| || Sbjct 26151624 ACCACCTCTGAGGCGGAGCACCAAATGAAGGGTGGATTCTTTCTGGATGTTGTAATCTGC 26151683 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || ||| || |||| || |||||||||||||| || || || | ||| ||||| | ||| Sbjct 26151684 CAAAGTACGACCGTCCTCAAGCTGCTTACCAGCAAAGATCAGCCTCTGTTGGTCTGGTGG 26151743 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | ||| ||||| ||| || ||| | | | | || ||| ||| || Sbjct 26151744 GATCCCCTCTTTGTCTTGGATCTTGGCTTTAACATTGTCGATGGTATCGGAACTTTCAAC 26151803 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||| || || || || || ||||| || ||||||||||| Sbjct 26151804 TTCCAATGTGATCGTCTTCCCGGTGAGAGTCTTGACGAAGATTTGCAT 26151851 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | | | ||| | ||| | |||| |||||| ||||| ||||| || || Sbjct 34231186 CCTCCTCTAAGCCTGAGCACAAGATGGAGTGTGGACTCCTTCTGAATGTTGTAGTCGGCT 34231127 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | ||| || | || || ||||| |||||||| || || | |||||||||||| | ||| Sbjct 34231126 AAAGTACGGCCATCTTCAAGCTGTTTACCAGCAAAGATCAATCGCTGCTGGTCAGGTGGG 34231067 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 42158 | || ||| || || ||| || |||| | | | ||||| ||| ||| Sbjct 34231066 ATGCCCTCTTTATCTTGGATCTTAGCCTTGACATTATCAATGGTGTCTGAGCT---TTCA 34231010 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | ||||| || || || |||| ||||| |||||||| ||||| Sbjct 34231009 ACTTCCAAAGTGATTGTCTTTCCGGTTAAAGTCTTAACAAAGATCTGCAT 34230960 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | | | ||| | ||| | |||| |||||| ||||| ||||| || || Sbjct 34348589 CCTCCTCTAAGCCTGAGCACAAGATGGAGTGTGGACTCCTTCTGAATGTTGTAGTCGGCT 34348530 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | ||| || | || || ||||| ||||| || || || | |||||||||||| | ||| Sbjct 34348529 AAAGTACGGCCATCTTCAAGCTGTTTACCGGCAAAGATCAATCGCTGCTGGTCAGGTGGG 34348470 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 42158 | || ||| || || ||| || |||| | | | ||||| ||| ||| Sbjct 34348469 ATGCCCTCTTTATCTTGGATCTTAGCCTTGACATTATCAATGGTGTCTGAGCT---TTCA 34348413 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | ||||| || || || |||| ||||| |||||||| ||||| Sbjct 34348412 ACTTCCAAAGTGATTGTCTTTCCGGTTAAAGTCTTAACAAAGATCTGCAT 34348363 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || ||||| ||||| || || || || || | || || ||||||||||| || || Sbjct 34231835 CTCTTTCTGAATGTTGTAGTCCGCAAGCGTGCGTCCATCCTCAAGCTGCTTACCCGCAAA 34231776 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || | ||||||||| | ||| | || ||||||||| ||| | || | | ||| Sbjct 34231775 GATCAGCCTCTGCTGGTCCGGTGGGATGCCTTCCTTGTCC-TGAATCTTCGCCTTCACGT 34231717 Query 42137 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | ||| || |||| ||||| || | ||| || || ||||| || | |||| Sbjct 34231716 TGTCAATCGTATCAGAGCTC---TCCACCTCAAGCGTTATAGTCTTGCCAGTCAAAGTCT 34231660 Query 42193 TTACAAAGATTTGCAT 42208 | ||||| || ||||| Sbjct 34231659 TCACAAAAATCTGCAT 34231644 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || ||||| ||||| || || || || || | || || ||||||||||| || || Sbjct 34349238 CTCTTTCTGAATGTTGTAGTCCGCAAGCGTGCGTCCATCCTCAAGCTGCTTACCCGCAAA 34349179 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || | ||||||||| | ||| | || ||||||||| ||| | || | | ||| Sbjct 34349178 GATCAGCCTCTGCTGGTCCGGTGGGATGCCTTCCTTGTCC-TGAATCTTCGCCTTCACGT 34349120 Query 42137 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | ||| || |||| ||||| || | ||| || || ||||| || | |||| Sbjct 34349119 TGTCAATCGTATCAGAGCTC---TCCACCTCAAGCGTTATAGTCTTGCCAGTCAAAGTCT 34349063 Query 42193 TTACAAAGATTTGCAT 42208 | ||||| || ||||| Sbjct 34349062 TCACAAAAATCTGCAT 34349047 >seq12 Length=166489593 Score = 89.7 bits (98), Expect = 6e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||| | || |||||| || || ||||| || || || || | |||| || Sbjct 69697770 ACCAAATGGAGCGTTGACTCCTTCTGGATGTTGTAGTCCGCTAGGGTTCTGCCGTCCTCC 69697829 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 ||||| || || ||||| ||||| || || ||||| | ||| | || || ||||| | Sbjct 69697830 AGCTGTTTTCCGGCGAAGATGAGGCGTTGTTGGTCCGGTGGGATGCCTTCTTTGTCTTGG 69697889 Query 42120 ATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 ||||| || | ||| | | | ||||| ||||| || || | || || ||||| Sbjct 69697890 ATTTTGGACTTTA-CGTTGTCGATTGTGTCTGAGGATTCGACCTCTAGGGTTATTGTTTT 69697948 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 |||||||| || ||||| ||||| |||||| Sbjct 69697949 GCCCGTTAAGGTTTTTACGAAGATCTGCATT 69697979 >seq11 Length=168460249 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/197 (71%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || ||||| || |||||||| |||||||| | ||||| | || ||||| || || Sbjct 109471810 CTCTTTCTGAATGTTATAATCAGCAAGAGTCCGACCATCATCCAATTGTTTACCCGCAAA 109471869 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || | ||||||||||| | ||| | | ||| |||||| ||| |||||| |||| Sbjct 109471870 GATTAACCGCTGCTGGTCAGGTGGGATCCCCTCTTTGTCC-TGAATTTTTGCCTTGACAT 109471928 Query 42136 TCGCCACCGTGTCGCTCGA---TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | || || || ||| ||||| || | ||||| || || ||||||| |||| Sbjct 109471929 TATCAACAGTATC---CGAACTCTCCACTTCCAGAGTGATCGTCTTCCCCGTTAAGGTCT 109471985 Query 42193 TTACAAAGATTTGCATT 42209 | || || || |||||| Sbjct 109471986 TGACGAATATCTGCATT 109472002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543202424635520