Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq4 114 9e-21 seq3 114 9e-21 seq16 95.1 9e-15 seq15 93.3 3e-14 seq8 93.3 3e-14 seq14 89.7 4e-13 seq1 86.0 4e-12 >seq4 Length=178899001 Score = 114 bits (126), Expect = 9e-21 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || || ||||| |||||||||||| | | | ||||||| ||||| Sbjct 81196113 TGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAGGTGCGGCCGTCTTCCAATTGC 81196172 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TTT 15092 || || ||| | |||| |||||| ||||| ||| || || |||||||| ||| ||| Sbjct 81196173 TTACCGGCGAAGATCAGACGCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGAATCTTT 81196232 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || ||| || | || || |||||| |||| || || | ||| ||||| ||||| || Sbjct 81196233 GC-TTTGACGTTATCGATGGTATCGGAGCTTTCGACCTCAAGGGTGATGGTCTTACCAGT 81196291 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 || ||| || ||||| ||||||||| Sbjct 81196292 CAAAGTCTTCACAAAGATTTGCATA 81196316 Score = 114 bits (126), Expect = 9e-21 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| |||||||| || || || ||||| |||||||||||| ||| | || |||| || Sbjct 81196334 AACCAAATGAAGAGTTGACTCCTTTTGAATGTTGTAATCGGCAAGAGTCCTGCCGTCCTC 81196393 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 || || || |||||| | ||||| | ||||||||| ||| || || |||||||| Sbjct 81196394 CAACTGCTTACCAGCGAAGATCAATCTCTGTTGGTCTGGTGGGATACCCTCCTTGTCTTG 81196453 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| || ||| | || || || ||| |||| || || | |||||| || || Sbjct 81196454 GATCTTGGCCTTGACATTATCGATGGTGTCGGAGCTTTCGACCTCAAGGGTAATCGTCTT 81196513 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || ||||| || || ||||||||| Sbjct 81196514 GCCGGTTAGGGTTTTGACGAAGATTTGCATA 81196544 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTC 15026 || ||||| || || || || || || ||||||||||| ||| ||| ||| ||||||| Sbjct 81196563 ACCAAATGGAGAGTTGACTCCTTCTGGATGTTGTAATCAGCT-AGAGTTCGGCCGTCTTC 81196621 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | |||||| |||||| | ||||| || || ||||| || |||||||||||||| Sbjct 81196622 GAGTTGTTTTCCAGCGAAGATCAATCGTTGCTGGTCTGGGGGGATTCCTTCCTTGTCTTG 81196681 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| || || | || || || || |||| || || | |||||| || || Sbjct 81196682 GATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGCTTTCAACCTCGAGGGTAATCGTCTT 81196741 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| ||||| || ||||| Sbjct 81196742 GCCAGTTAGGGTTTTGACAAAGATCTGCAT 81196771 Score = 96.9 bits (106), Expect = 2e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 14962 CTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCG 15021 || || || | ||| || || || || ||||| ||||||||||| ||| | || || Sbjct 81195873 CTCAACACCAGATGCAGAGTCGACTCCTTTTGGATGTTGTAATCCGCAAGAGTCCTGCCG 81195932 Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081 ||||| || ||||| || || | || | | ||| ||||| ||| || || |||||| Sbjct 81195933 TCTTCCAACTGTTTACCCGCAAAGATGAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTG 81195992 Query 15082 TCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAAT 15140 || || ||||| ||| || | || ||||| ||| | || || || ||||| || Sbjct 81195993 TCCTGGATCTTTGC-TTTCACGTTGTCGATAGTGTCGGAGCTCTCGACCTCCAAGGTGAT 81196051 Query 15141 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||| ||||| |||| || || ||||| ||||||||| Sbjct 81196052 GGTCTTACCGGTCAAGGTCTTAACAAAGATTTGCATA 81196088 >seq3 Length=168485022 Score = 114 bits (126), Expect = 9e-21 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 |||||||| || |||||||| |||||||||||| || |||| | ||||| | ||| Sbjct 118895877 TGAAGGGTGGATTCTTTTTGGATGTTGTAATCGGCTAGGGTTCTGCCCTCTTCGAGCTGT 118895936 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || ||| | || | ||| ||||| || ||| |||||||| ||||| || ||| Sbjct 118895937 TTTCCGGCGAAGATGAGACGTTGTTGATCCGGTGGGATTCCTTCTTTGTCTTGGATCTTG 118895996 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| || | || || || ||| |||| || |||| || || ||||| || || Sbjct 118895997 GCTTTGACGTTGTCGATTGTGTCGGAGCTTTCGACTTCTAGAGTGATTGTTTTTCCGGTT 118896056 Query 15154 AGAGTTTTTACAAAAATTTGCATATTTGAAA 15184 || ||||| ||||| || ||||| ||||||| Sbjct 118896057 AGGGTTTTGACAAAGATCTGCATGTTTGAAA 118896087 >seq16 Length=188620566 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| ||||| || ||||| || || || |||||||| || ||| | | | ||||| Sbjct 29321525 AACCAAATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGAGTACGGCCATCTTC 29321584 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 || ||||||||||| | ||||| | ||| ||||| ||| || || ||||| || Sbjct 29321585 CAACTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCCTTATCTTG 29321644 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| || ||| ||| | || || || || | |||| || || || || ||||| || Sbjct 29321645 AATCTTAGCTTTGACATTGTCAATGGTGTCCGAACTTTCAACCTCCAAAGTGATGGTCTT 29321704 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| ||| || ||||| || ||||| Sbjct 29321705 GCCAGTCAAAGTCTTGACAAAGATCTGCAT 29321734 Score = 87.8 bits (96), Expect = 1e-12 Identities = 155/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || || || || || ||||| |||||||| ||| |||| | | ||||||| Sbjct 106906193 ACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGCGAGAGTGCGACCGTCTTCG 106906134 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | |||||| |||||| | || | | ||| ||||| ||||||||||||||||| Sbjct 106906133 AGTTGTTTTCCAGCGAAGATGAGCCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTGG 106906074 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| || || | || || || ||| | | || || || | || || || || Sbjct 106906073 ATTTTCGCCTTGACGTTGTCGATTGTGTCGGAACTCTCGACCTCGAGAGTGATTGTCTTG 106906014 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCA--TATTTGAAATAAATT 15190 || || || ||||| || || || |||| | |||||| | |||| Sbjct 106906013 CCAGTTAGGGTTTTGACGAAGATCTGCATCTGTTTGAATTGAATT 106905969 >seq15 Length=171247636 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||||||||| || ||||| || ||||||||||| | | | | |||| || Sbjct 26151643 ACCAAATGAAGGGTGGATTCTTTCTGGATGTTGTAATCTGCCAAAGTACGACCGTCCTCA 26151702 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || ||||| | |||| | ||||||||| ||| || || || ||||| Sbjct 26151703 AGCTGCTTACCAGCAAAGATCAGCCTCTGTTGGTCTGGTGGGATCCCCTCTTTGTCTTGG 26151762 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| ||| ||| | || || |||||| | |||| || || || || || || || Sbjct 26151763 ATCTTGGCTTTAACATTGTCGATGGTATCGGAACTTTCAACTTCCAATGTGATCGTCTTC 26151822 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| || || || |||||||| Sbjct 26151823 CCGGTGAGAGTCTTGACGAAGATTTGCAT 26151851 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCG-CT 15008 ||||||| | || | || | ||||||||| || || ||||| |||||||| ||| || Sbjct 26152081 CCACCTCTGAGCCTGAGCACGAGATGAAGGGTTGACTCCTTTTGGATGTTGTAGTCGGCT 26152140 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || | | ||||||| | || || || ||| | ||||| | || ||||| || Sbjct 26152141 AAGG-TACGGCCGTCTTCAAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGAGG 26152199 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || || |||||||| || ||| || || | || || |||||| | | ||||| Sbjct 26152200 GATCCCCTCCTTGTCTTGGATCTTGGCCTTAACGTTGTCGATTGTATCGGAACTCTCTAC 26152259 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| ||||| || || || | |||||| |||||||||||||| Sbjct 26152260 CTCAAGGGTGATGGTCTTTCCGGTTAAAGTTTTCACAAAAATTTGCAT 26152307 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTCTAATT 15031 ||| ||||| || ||||| || ||||||||||| || || | | | || || | | Sbjct 34231391 ATGGAGGGTGGATTCTTTCTGGATGTTGTAATCTGCCAAG-GTACGACCATCCTCAAGCT 34231333 Query 15032 GTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTT 15091 |||| ||||| | ||||| | ||||||||| ||| || || || ||||| || | Sbjct 34231332 GTTTTCCAGCAAAGATCAATCTCTGTTGGTCTGGTGGGATCCCCTCTTTGTCTTGGATCT 34231273 Query 15092 TGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTG 15151 || ||| ||| | || || |||||| | |||| || || || || || || || || | Sbjct 34231272 TGGCTTTAACATTGTCGATGGTATCGGAACTTTCAACTTCCAATGTGATCGTCTTCCCGG 34231213 Query 15152 TCAGAGTTTTTACAAAAATTTGCAT 15176 | ||||| || ||||| |||||||| Sbjct 34231212 TGAGAGTCTTGACAAAGATTTGCAT 34231188 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || ||||| || ||||||||||| | | | | | || || | || Sbjct 34348794 ATGGAGGGTGGATTCTTTCTGGATGTTGTAATCTGCCAAAGTACGACCATCCTCAAGCTG 34348735 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| ||||| | ||||| | ||||||||| ||| || || || ||||| || || Sbjct 34348734 TTTTCCAGCAAAGATCAATCTCTGTTGGTCTGGTGGGATCCCCTCTTTGTCTTGGATCTT 34348675 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | ||| ||| | || || |||||| | |||| || || || || || || || || || Sbjct 34348674 GGCTTTAACATTGTCGATTGTATCGGAACTTTCAACTTCCAATGTGATCGTCTTCCCAGT 34348615 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 ||||| || ||||| |||||||| Sbjct 34348614 GAGAGTCTTGACAAAGATTTGCAT 34348591 >seq8 Length=153252196 Score = 93.3 bits (102), Expect = 3e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || || || ||||| || |||||||| ||| || |||| ||||||| | ||| Sbjct 2509506 TGGAGAGTCGACTCTTTCTGGATGTTGTAGTCGGCTAGGGTTCTGCCGTCTTCAAGCTGT 2509447 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || ||| | || | |||||||||||| ||| || ||||||||||| ||| ||| Sbjct 2509446 TTTCCGGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCTTCCTTGTCTTGAATCTTG 2509387 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || || | || || || ||| ||| || || || || || || ||||| || Sbjct 2509386 GCCTTCACGTTGTCGATCGTGTCGGAGGATTCCACCTCCAATGTGATCGTCTTACCCGTT 2509327 Query 15154 AGAGTTTTTACAAAAATTTGCATATT 15179 || ||||| || || || ||||| || Sbjct 2509326 AGGGTTTTCACGAAGATCTGCATTTT 2509301 >seq14 Length=174509413 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||||| | ||| | |||||| || || ||||| || ||||||||||| Sbjct 97878156 CCGCCTCTCAATCTCAGAACAAGATGAAGTGTTGACTCTTTCTGGATGTTGTAATCAGCA 97878097 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | || ||||| || || |||||| | ||||| | ||||||||| ||| Sbjct 97878096 AGTGTTCTTCCATCCTCTAACTGCTTTCCAGCGAAAATCAACCTCTGTTGGTCTGGTGGG 97878037 Query 15070 ATTCCTTCCTTGTC 15083 || ||||| ||||| Sbjct 97878036 ATACCTTCTTTGTC 97878023 >seq1 Length=153905722 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || | ||||| | ||| | ||||| || || || || || |||||||| || | Sbjct 17864344 CCTCCCCTCAATCGGAGAACAAGGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGCG 17864285 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| ||||||| | |||||| || ||| | || | | |||||||| || Sbjct 17864284 AGGGTTCTGCCGTCTTCAAGTTGTTTTCCGGCGAAGATAAGCCTTTGTTGGTCTGGGGGG 17864225 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| |||||| || ||| | || || || ||| | ||||| Sbjct 17864224 ATTCCTTCCTTGTCTTGGATTTTGGCCTTGACATTGTCGATGGTGTCGGAGCTCTCTACT 17864165 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || || || || || || ||||| || || || || ||||| Sbjct 17864164 TCGAGAGTGATTGTCTTTCCGGTAAGAGTCTTGACGAAGATCTGCAT 17864118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357385344467480