Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq17 127 3e-24 seq15 118 1e-21 seq14 113 6e-20 >seq17 Length=214723238 Score = 127 bits (140), Expect = 3e-24 Identities = 245/359 (68%), Gaps = 2/359 (1%) Strand=Plus/Minus Query 12749 GCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGT 12808 |||||| || ||||| | |||| ||| || || | ||||| |||||||| ||||| Sbjct 138181733 GCGGTTGGTGGCCGCAACTACAATGATACCTGTGTTCCCTTCGAACCCATCCATTTCAGT 138181674 Query 12809 CAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCACCCGCACTGCG 12868 ||| || || || | |||||||| | |||||||||| | | ||||| | | Sbjct 138181673 CAAAAGCTGGTTAAGCGTTTGTTCTCTTTCATCATTCCCTCCTCCAATACCCGTTCCTCT 138181614 Query 12869 TTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGC 12928 ||| | || || || |||||||| |||| || |||||||||||| ||| || || Sbjct 138181613 TTGTCTCCCAACCGCATCAATTTCATCAACAAATACGATACACGGTGCATTCTCTTTTGC 138181554 Query 12929 AACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATT 12988 || || | |||||| || || |||||| ||||| |||||||| || ||||| | Sbjct 138181553 CTTTTTGAACAGATCTCGAACCCTTGAGGCACCAACACCAACAAACATTTCAACAAATTC 138181494 Query 12989 GGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGA 13047 | | ||| || | || ||||||||| | |||||| || || ||| || | | Sbjct 138181493 CGAACCTGAA-ATGGAGAAGAAGGGGACACCTGCTTCACCAGCAATAGCTTTAGCCAATA 138181435 Query 13048 GGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACCA 13106 | || ||||| || ||||| ||| | ||||| |||| ||| || || |||||| Sbjct 138181434 GTGTTTTCCCTGTTCCTGGGGGACCCACAAGAAGAACACCCTTTGGAATTCTAGCACCA 138181376 Score = 107 bits (118), Expect = 2e-18 Identities = 247/362 (68%), Gaps = 10/362 (3%) Strand=Plus/Plus Query 12750 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTC 12809 ||||| || ||||| | |||| ||| ||||| | || || || ||||| || ||| Sbjct 143474356 CGGTTGGTAGCCGCAACTACAATGATACCCGTGTTTCCTTCAAACCCGTCCATTTCGGTC 143474415 Query 12810 AAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATAC--CACCCGCACTGC 12867 || || || || | |||||||| |||||||||||| | || | | |||||| | | Sbjct 143474416 AAAAGCTGGTTAAGCGTTTGTTCTCGTTCATCATTCCC--GCCTCCGATACCCGCCCCTC 143474473 Query 12868 GTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTC-ACGG 12926 ||| | || || || || ||||| |||| || || ||||||||| ||| || | Sbjct 143474474 TTTGTCTCCCAACCGCATCGATTTCATCAACAAACACAATACACGGTGCATTCTCTTTCG 143474533 Query 12927 GCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAA 12986 | ||| ||| | || || |||||| |||||| ||||| ||||||||||| ||||| Sbjct 143474534 CCTTCTTGAAA-AGGTCCCGGACTCTCGAGGCACCAACACCAACAAACATCTCAACAAAT 143474592 Query 12987 TTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAG 13045 | | ||||| || | || || ||||| | |||||| || || || || || Sbjct 143474593 TCCGAACCGGAA-ATCGAGAAAAATGGGACACCAGCTTCACCAGCAATAGCCTTAGCCAG 143474651 Query 13046 GAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGG-ATCCTGGCAC 13104 || || || || || || || ||| | ||||| |||| | |||| |||| |||| Sbjct 143474652 CAGAGTTTTACCTGTTCCCGGGGGACCCACAAGAAGAACACC-CTTGGGAATCCGAGCAC 143474710 Query 13105 CA 13106 || Sbjct 143474711 CA 143474712 >seq15 Length=171247636 Score = 118 bits (130), Expect = 1e-21 Identities = 153/210 (73%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 127537 ACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTT 127596 ||||||||| || || || | || |||||||| | ||| ||||| | || ||||| Sbjct 39549726 ACCCTCGTCTCGCGATATCAACTCGTTCGAGAACGTTAAACCCGGCATCAACCCACGCTT 39549785 Query 127597 CTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAA 127656 ||||||||||||||| |||||||| ||||| ||||| || || || ||||| || || Sbjct 39549786 CTTCAACCAGAAAATAGCACAAAAGCTACCAGAAAAGAATATTCCTTCAACACAGGCAAA 39549845 Query 127657 CGCAAATAGACGCTCGGCAAAGGA-GCGGGACTTTGTATCAAACCACTTCATCGCCCACT 127715 |||| || | ||| ||||| || | | || || | ||||||||||||||| | Sbjct 39549846 GGCAATTATTCTCTCTGCAAACGATTCTGAAC----CGTCGATCCACTTCATCGCCCAAT 39549901 Query 127716 GTGCCTTTTTCTCGATACATGGGACGGTCT 127745 |||||||||| | |||||| | |||| Sbjct 39549902 TCGCCTTTTTCTGTACACATGGTATTGTCT 39549931 >seq14 Length=174509413 Score = 113 bits (124), Expect = 6e-20 Identities = 182/261 (70%), Gaps = 3/261 (1%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| | ||| || || || ||||| | ||| || ||||| ||| || ||||| | || Sbjct 142133067 GTGTAAACCTTCATCTCGTGAGATTAATTCGTTTGAGAATGTCAGTCCCGGCATTAACCC 142133008 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 ||||| |||| |||||| |||||||| || || |||||||| || || || || || Sbjct 142133007 GCGCTTTTTCAGCCAGAATATCGCACAGAAGCTTCCTGAGAAGAATATTCCTTCGACGCA 142132948 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 || || |||| | ||||| ||||| || ||| | || | ||| |||| ||| Sbjct 142132947 GGCAAAAGCAATGATCCGCTCTGCAAACGATTCGGA---TCCGTCGATCCATTTCAGCGC 142132891 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 127770 ||| | || || |||| ||| || |||| ||| | ||||| ||| || ||||| Sbjct 142132890 CCAATTGGCTTTCTTCTGGATGCAGGGGATGGTTTCAATCGCGCGAAATAGACGATTCTT 142132831 Query 127771 TTCTGATGGATCTTTGATGTA 127791 ||| | | |||||||||||| Sbjct 142132830 TTCAGTGGAATCTTTGATGTA 142132810 Score = 86.0 bits (94), Expect = 8e-12 Identities = 189/280 (68%), Gaps = 10/280 (4%) Strand=Plus/Plus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGG- 12850 || |||||||| || ||||| | ||||| || |||||||| | ||||||||| | Sbjct 14537973 AAACCATCCATTTCCGTCAACAACTGATTAATCGTTTGTTCCCTCTCATCATTCCCACCA 14538032 Query 12851 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACA 12910 | || |||||||| | ||| |||| || || || || || ||||| || || || || Sbjct 14538033 CCTAA-ACCCGCACCTCTCTGCCTACCAACTGCATCTATCTCATCAATAAACACAATGCA 14538091 Query 12911 CGG----TTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACAC 12966 ||| || |||| | | ||||| | ||| | ||||| ||||| |||| Sbjct 14538092 CGGCGCTTTCGATTTCGCCTTC----TCAAACAAATCCCTAACTCTAGAAGCACCAACAC 14538147 Query 12967 CCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCAC 13026 ||||||||| || ||||| | | || | |||| || || || || | |||| Sbjct 14538148 CCACAAACAATTCGACAAATTCCGAAGCAGCACATGAGAAAAACGGCACTCCAGCCTCAC 14538207 Query 13027 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 |||| | ||| || || | ||||||||||| || || || Sbjct 14538208 CCGCAACGGCCCGAGCTAAAAGGGTCTTCCCGGTTCCAGG 14538247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613495482012480