Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq11 96.9 2e-15 seq14 93.3 3e-14 seq3 93.3 3e-14 seq12 86.0 4e-12 seq16 82.4 5e-11 >seq11 Length=168460249 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 ||||| || || |||||||| || | | || |||| ||||||||||| || |||| Sbjct 109471811 TCTTTCTGAATGTTATAATCAGCAAGAGTCCGACCATCATCCAATTGTTTACCCGCAAAG 109471870 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 ||||| |||||||| || | || | || |||||||| |||||| || | | Sbjct 109471871 ATTAACCGCTGCTGGTCAGGTGGGATCCCCTCTTTGTCCTGAATTTTTGCCTTGACATTA 109471930 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | || || || | || ||||| |||| ||| || || || |||||||| || || ||| Sbjct 109471931 TCAACAGTATCCGAACTCTCCACTTCCAGAGTGATCGTCTTCCCCGTTAAGGTCTTGACG 109471990 Query 39709 AAGATCTGCAT 39719 || |||||||| Sbjct 109471991 AATATCTGCAT 109472001 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 ||||| || || |||||||| || | | || |||| ||||||||||| || |||| Sbjct 109717471 TCTTTCTGAATGTTATAATCAGCAAGAGTCCGACCATCATCCAATTGTTTACCCGCAAAG 109717530 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 ||||| |||||||| || | || | || |||||||| |||||| || | | Sbjct 109717531 ATTAACCGCTGCTGGTCGGGCGGGATCCCCTCTTTGTCCTGAATTTTTGCCTTGACATTA 109717590 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | || || || | || || || || | ||| || || || ||||| || || || ||| Sbjct 109717591 TCAACAGTATCCGAACTCTCGACCTCTAGAGTGATCGTCTTCCCCGTCAAGGTCTTGACG 109717650 Query 39709 AAGATCTGCAT 39719 || |||||||| Sbjct 109717651 AATATCTGCAT 109717661 >seq14 Length=174509413 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 |||| ||||||||| || || || ||||||||||| |||||| | |||| ||| Sbjct 117470420 ACCAGATGCAAAGTAAACTCCTTCTGAATATTATAATCCGCCAAAGTCCTCCCATCTTCC 117470479 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 || || ||||| ||||||| | | |||||||||| || | |||||||| || | | Sbjct 117470480 AACTGCTTCCCAGCAAAAATAAGCCTTTGCTGATCCGGTGGAATACCTTCTTTATC-CTT 117470538 Query 39631 ATTTTTTG-TTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTT 39689 | | || | ||| | | | | ||| | | || || || || || ||||| || || Sbjct 117470539 AATCTTAGCTTTGACGTTATCGATGGTGCCAGAACTCTCGACCTCTAACGTAATGGTCTT 117470598 Query 39690 ACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | ||||| ||||| |||||||||||||| Sbjct 117470599 GTCGGTTAAGGTTTTGACGAAGATCTGCAT 117470628 >seq3 Length=168485022 Score = 93.3 bits (102), Expect = 3e-14 Identities = 163/234 (70%), Gaps = 10/234 (4%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| || | ||| || || | || | ||| ||||||||| || || |||||||| Sbjct 118895853 CCGCCGCGGAGACGAAGAACGAGGTGAAGGGTGGATTCTTTTTGGATGTTGTAATCGGCT 118895912 Query 39553 AAAACGCGTTCA----TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608 | | |||| || || | ||||| ||| | || || | ||| || ||||||| Sbjct 118895913 A----GGGTTCTGCCCTCTTCGAGCTGTTTTCCGGCGAAGATGAGACGTTGTTGATCCGG 118895968 Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTT 39667 || | ||||||||||| || || ||| | ||| | | | |||||| | ||||| Sbjct 118895969 TGGGATTCCTTCTTTGTCTTGGATCTTGGCTTTGA-CGTTGTCGATTGTGTCGGAGCTTT 118896027 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGT 39721 | || || | ||| |||||||| || |||| ||||| || ||||||||||||| Sbjct 118896028 CGACTTCTAGAGTGATTGTTTTTCCGGTTAGGGTTTTGACAAAGATCTGCATGT 118896081 >seq12 Length=166489593 Score = 86.0 bits (94), Expect = 4e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || |||| ||||| ||| | || || | || || || |||| || | |||||||||| Sbjct 69697824 TCCTCCAGCTGTTTTCCGGCGAAGATGAGGCGTTGTTGGTCCGGTGGGATGCCTTCTTTG 69697883 Query 39625 TCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAAT 39683 || ||||| || | ||| | | | |||||||| | ||| || || | || || Sbjct 69697884 TCTTGGATTTTGGACTTTA-CGTTGTCGATTGTGTCTGAGGATTCGACCTCTAGGGTTAT 69697942 Query 39684 TGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||| |||||||| |||||||||||||||||||| Sbjct 69697943 TGTTTTGCCCGTTAAGGTTTTTACGAAGATCTGCAT 69697978 >seq16 Length=188620566 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| || ||||| || | |||| || ||||| || || || ||||| Sbjct 106906212 GCCACCACGGAGACGGAGGACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGC 106906153 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | | ||| | || || | |||||| || | || || | | |||||| || | ||| Sbjct 106906152 GAGAGTGCGACCGTCTTCGAGTTGTTTTCCAGCGAAGATGAGCCTCTGCTGGTCTGGGGG 106906093 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCA 39670 | ||||| ||||| ||||| || | ||| | | | |||||| | || || | Sbjct 106906092 AATTCCTTCCTTGTCTTGGATTTTCGCCTTGA-CGTTGTCGATTGTGTCGGAACTCTCGA 106906034 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | ||| ||||| || || |||| ||||| |||||||||||||| Sbjct 106906033 CCTCGAGAGTGATTGTCTTGCCAGTTAGGGTTTTGACGAAGATCTGCAT 106905985 Score = 82.4 bits (90), Expect = 5e-11 Identities = 141/203 (69%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 39516 ATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTG 39575 ||||||||| || || || ||||||||| | | |||| | |||| ||||| || Sbjct 146055191 ATGCAAAGTAGACTCCTTCTGAATATTATAAACCGGCAAAGTCCTCCCATCTTCCAACTG 146055132 Query 39576 TTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTT 39635 ||||| ||||||| | | ||| ||||||| || | |||||||| || | | || Sbjct 146055131 CTTCCCAGCAAAAATAAGCCTCTGTTGATCCGGTGGAATACCTTCTTTATCCTAAAACTT 146055072 Query 39636 TTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCC 39693 ||| | | ||| || ||||| | || || || || || ||||| || || || Sbjct 146055071 AGCTTTGACGTTATCGATA--GTGTCAGAACTCTCGACCTCTAACGTAATGGTCTTGCCG 146055014 Query 39694 GTTAAAGTTTTTACGAAGATCTG 39716 ||||| ||||| ||||||||||| Sbjct 146055013 GTTAAGGTTTTGACGAAGATCTG 146054991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347363131109624