Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq17 138 1e-27 seq14 107 2e-18 seq6 91.5 2e-13 >seq17 Length=214723238 Score = 138 bits (152), Expect = 1e-27 Identities = 282/410 (69%), Gaps = 18/410 (4%) Strand=Plus/Plus Query 15933 CGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTG 15990 || || || || || | |||| ||||| |||||| || |||| || ||||| || | Sbjct 143474356 CGGTTGGTAGCCGCAACTACAATGATACCCGTGTTTCCTT--CAAACCCGTCCATTTCGG 143474413 Query 15991 TCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATAC--CACCAGCACT 16048 ||||||||||||||| |||||||| |||||||||||| | || | | ||| || | Sbjct 143474414 TCAAAAGCTGGTTAAGCGTTTGTTCTCGTTCATCATTCCC--GCCTCCGATACCCGCCCC 143474471 Query 16049 GCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGAT----TTT 16104 | ||| | || || ||||| || ||||||| || || || || ||| || ||| Sbjct 143474472 TCTTTGTCTCCCAACCGCATCGATTTCATCAACAAACACAATACACGGTGCATTCTCTTT 143474531 Query 16105 CGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCA 16164 ||| | ||| ||| || ||||| || | | ||| || ||||||||||||||||| | Sbjct 143474532 CGC---CTTCTTGAAA-AGGTCCCGGACTCTCGAGGCACCAACACCAACAAACATCTCAA 143474587 Query 16165 CAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGG 16223 |||| | | ||||| || | || || |||||| || |||||| ||||| || Sbjct 143474588 CAAATTCCGAACCGGAA-ATCGAGAAAAATGGGACACCAGCTTCACCAGCAATAGCCTTA 143474646 Query 16224 GCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTG 16283 || || ||||| ||||| || || || |||| | || || |||| |||||| Sbjct 143474647 GCCAGCAGAGTTTTACCTGTTCCCGGGGGACCCACAAGAAGAACACCCTTGGGAATCCGA 143474706 Query 16284 GCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTC 16333 || ||| || | ||||| |||| ||| | ||| || |||| ||| Sbjct 143474707 GCACCAACAGCAGTAAACCTCTCGGGTTTCTTTAAAAACTCAACAACCTC 143474756 Score = 131 bits (144), Expect = 2e-25 Identities = 309/460 (67%), Gaps = 10/460 (2%) Strand=Plus/Minus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGT-TTCGTTATCAAA 15976 || || || || |||| || || || || | |||| |||||||| ||| | || || Sbjct 138181747 TCTAGAATGTCTGCGCGGTTGGTGGCCGCAACTACAATGATACCTGTGTTCCCT-TCGAA 138181689 Query 15977 ACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 16036 |||||||| || |||||||||||||||| |||||||| | |||||||||| || Sbjct 138181688 CCCATCCATTTCAGTCAAAAGCTGGTTAAGCGTTTGTTCTCTTTCATCATTCCCTCCTCC 138181629 Query 16037 ACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGG 16096 | ||| | | | ||| | || || |||||||| ||||||| || ||||| || || Sbjct 138181628 AATACCCGTTCCTCTTTGTCTCCCAACCGCATCAATTTCATCAACAAATACGATACACGG 138181569 Query 16097 TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAA 16156 | ||| || || || || ||||| || || | ||| || ||||||||||| Sbjct 138181568 TGCATTCTCTTTTGCCTTTTTGAACAGATCTCGAACCCTTGAGGCACCAACACCAACAAA 138181509 Query 16157 CATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAA 16215 ||| || ||||| | | | ||| || | || |||||||||| | |||||| |||| Sbjct 138181508 CATTTCAACAAATTCCGAACCTGAA-ATGGAGAAGAAGGGGACACCTGCTTCACCAGCAA 138181450 Query 16216 TGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTG 16275 | ||| || | || || || || || ||||| |||| | || || |||| || Sbjct 138181449 TAGCTTTAGCCAATAGTGTTTTCCCTGTTCCTGGGGGACCCACAAGAAGAACACCCTTTG 138181390 Query 16276 GAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTT 16335 |||| | || ||| || | ||||| |||| ||| | ||| || || | ||| Sbjct 138181389 GAATTCTAGCACCAACAGCAGTAAACCTCTCCGGTTTCTTCAAAAACTCAACGA---CTT 138181333 Query 16336 CC---AATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 16372 || || || | ||| || |||| | ||| | ||||| Sbjct 138181332 CCATGAAATCCTGTTTTGCTTCGTCTACTCCCGCCACATC 138181293 >seq14 Length=174509413 Score = 107 bits (118), Expect = 2e-18 Identities = 198/282 (70%), Gaps = 10/282 (4%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGC-TG 16032 |||||||||||| || ||||| | ||| ||||| |||||||||| ||||||||| | Sbjct 14537972 AAAACCATCCATTTCCGTCAACAACTGATTAATCGTTTGTTCCCTCTCATCATTCCCACC 14538031 Query 16033 GCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 | || ||| |||| | ||| | || || ||||| ||||||||||| || || |||| Sbjct 14538032 ACCTA-AACCCGCACCTCTCTGCCTACCAACTGCATCTATCTCATCAATAAACACAATGC 14538090 Query 16093 ATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCACA 16148 | || ||||| || || ||||| | ||||| || || || | || || ||| Sbjct 14538091 ACGG--CGCTTTCGATTTCGCCTTCTCAAACAAATCCC-TA-ACTCTAGAAGCACCAACA 14538146 Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 16208 || ||||||| || ||||| | | || | |||| || || || || || ||| Sbjct 14538147 CCCACAAACAATTCGACAAATTCCGAAGCAGCACATGAGAAAAACGGCACTCCAGCCTCA 14538206 Query 16209 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 16250 ||||||| ||| || || | ||| ||||| || || || ||| Sbjct 14538207 CCCGCAACGGCCCGAGCTAAAAGGGTCTTCCCGGTTCCAGGC 14538248 >seq6 Length=103887801 Score = 91.5 bits (100), Expect = 2e-13 Identities = 195/282 (69%), Gaps = 12/282 (4%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| || ||||| || ||||| | ||| |||||||||||||||| ||||||||| | | Sbjct 101244924 AAACCCGTCCATTTCAGTCAACAACTGATTAATAGTTTGTTCCCTCTCATCATTC-CCGC 101244982 Query 16034 CA--TACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 || || ||| || | | ||| |||| || ||||| |||||||| || || || ||| Sbjct 101244983 CACCTA-AACCCGCTCCTCTCTGCCTTCCTACCGCATCTATCTCATCGATAAACACAATG 101245041 Query 16092 CATGGTTGATTTTCGCGAGCGAC--TTCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 16147 || || ||||| || | |||||| | ||||| || || || | || || || Sbjct 101245042 CAAGG--CGCTTTCGATTTCGCCTTTTCAAACAAATCCC-TA-ACCCTAGATGCACCAAC 101245097 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 16207 ||| ||||||| ||| || || | | || | ||| || || || || | ||| Sbjct 101245098 ACCTACAAACAACTCAACGAATTCCGACGCTGCACACGAGAAAAACGGCACCCCCGCTTC 101245157 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 ||| |||| ||| || || | ||| ||||| || || || || Sbjct 101245158 ACCTGCAACGGCCCGAGCCAAAAGGGTCTTCCCGGTCCCCGG 101245199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620730543820160