Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq17 154 2e-32 seq14 104 3e-17 seq6 96.9 4e-15 seq9 91.5 2e-13 seq15 89.7 6e-13 >seq17 Length=214723238 Score = 154 bits (170), Expect = 2e-32 Identities = 314/460 (68%), Gaps = 10/460 (2%) Strand=Plus/Minus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGT-TTCATTATCAAA 9283 || || || || |||| || || || || | |||| |||||||| ||| | || || Sbjct 138181747 TCTAGAATGTCTGCGCGGTTGGTGGCCGCAACTACAATGATACCTGTGTTCCCT-TCGAA 138181689 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 |||||||| || |||||||| ||||||| |||||||| | |||||||||| || Sbjct 138181688 CCCATCCATTTCAGTCAAAAGCTGGTTAAGCGTTTGTTCTCTTTCATCATTCCCTCCTCC 138181629 Query 9344 ACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGG 9403 | ||| | | | ||| | || || |||||||| ||||||| || || ||||| || Sbjct 138181628 AATACCCGTTCCTCTTTGTCTCCCAACCGCATCAATTTCATCAACAAATACGATACACGG 138181569 Query 9404 TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAA 9463 | ||| || || ||| || ||||| ||||||||| ||| || ||||||||||| Sbjct 138181568 TGCATTCTCTTTTGCCTTTTTGAACAGATCTCGAACCCTTGAGGCACCAACACCAACAAA 138181509 Query 9464 CATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAA 9522 ||| || ||||| | | | ||| || | || |||||||||| | |||||| |||| Sbjct 138181508 CATTTCAACAAATTCCGAACCTGAA-ATGGAGAAGAAGGGGACACCTGCTTCACCAGCAA 138181450 Query 9523 TGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTG 9582 | ||| || | || || || || || ||||| |||| | || || ||||| || Sbjct 138181449 TAGCTTTAGCCAATAGTGTTTTCCCTGTTCCTGGGGGACCCACAAGAAGAACACCCTTTG 138181390 Query 9583 GAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTT 9642 |||| | || ||| || | ||||| |||| ||| | ||| || || | ||| Sbjct 138181389 GAATTCTAGCACCAACAGCAGTAAACCTCTCCGGTTTCTTCAAAAACTCAACGA---CTT 138181333 Query 9643 CC---AATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 9679 || || || | ||| || |||| | ||| | ||||| Sbjct 138181332 CCATGAAATCCTGTTTTGCTTCGTCTACTCCCGCCACATC 138181293 Score = 141 bits (156), Expect = 1e-28 Identities = 279/406 (69%), Gaps = 10/406 (2%) Strand=Plus/Plus Query 9240 CGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTG 9297 || || || || || | |||| ||||| |||||| || |||| || ||||| || | Sbjct 143474356 CGGTTGGTAGCCGCAACTACAATGATACCCGTGTTTCCTT--CAAACCCGTCCATTTCGG 143474413 Query 9298 TCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACT 9355 ||||||| ||||||| |||||||| |||||||||||| | || | | | || || | Sbjct 143474414 TCAAAAGCTGGTTAAGCGTTTGTTCTCGTTCATCATTCCC--GCCTCCGATACCCGCCCC 143474471 Query 9356 GCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCG 9415 | ||| | || || ||||| || ||||||| || |||||||| ||| ||| || Sbjct 143474472 TCTTTGTCTCCCAACCGCATCGATTTCATCAACAAACACAATACACGGTGCATTCTCTTT 143474531 Query 9416 GGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 || | | || || || || || || ||| || ||||||||||||||||| ||||| Sbjct 143474532 CGCCTTCTTGAAAAGGTCCCGGACTCTCGAGGCACCAACACCAACAAACATCTCAACAAA 143474591 Query 9476 GTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGA 9534 | | ||||| || | || || |||||| || |||||| ||||| || || | Sbjct 143474592 TTCCGAACCGGAA-ATCGAGAAAAATGGGACACCAGCTTCACCAGCAATAGCCTTAGCCA 143474650 Query 9535 GAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGC 9594 | ||||| ||||| || || || |||| | || || ||||| |||||| || | Sbjct 143474651 GCAGAGTTTTACCTGTTCCCGGGGGACCCACAAGAAGAACACCCTTGGGAATCCGAGCAC 143474710 Query 9595 CACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 || || | ||||| |||| ||| | ||| || |||| ||| Sbjct 143474711 CAACAGCAGTAAACCTCTCGGGTTTCTTTAAAAACTCAACAACCTC 143474756 >seq14 Length=174509413 Score = 104 bits (114), Expect = 3e-17 Identities = 194/282 (69%), Gaps = 10/282 (4%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGC-TG 9339 |||||||||||| || ||||| | || ||||| |||||||||| ||||||||| | Sbjct 14537972 AAAACCATCCATTTCCGTCAACAACTGATTAATCGTTTGTTCCCTCTCATCATTCCCACC 14538031 Query 9340 GCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 | || ||| |||| | ||| | || || ||||| ||||||||||| || ||||| | Sbjct 14538032 ACCTA-AACCCGCACCTCTCTGCCTACCAACTGCATCTATCTCATCAATAAACACAATGC 14538090 Query 9400 ATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACA 9455 | || || |||| || | ||||| | ||| | ||| || || || ||| Sbjct 14538091 ACGGCGCTTTCGATTTC----GCCTTCTCAAACAAATCCCTAACTCTAGAAGCACCAACA 14538146 Query 9456 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 9515 || ||||||| || ||||| | | || | |||| || || || || || ||| Sbjct 14538147 CCCACAAACAATTCGACAAATTCCGAAGCAGCACATGAGAAAAACGGCACTCCAGCCTCA 14538206 Query 9516 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 9557 ||||||| ||| || || | ||| ||||| || || || ||| Sbjct 14538207 CCCGCAACGGCCCGAGCTAAAAGGGTCTTCCCGGTTCCAGGC 14538248 >seq6 Length=103887801 Score = 96.9 bits (106), Expect = 4e-15 Identities = 193/282 (68%), Gaps = 12/282 (4%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| || ||||| || ||||| | || |||||||||||||||| ||||||||| | | Sbjct 101244924 AAACCCGTCCATTTCAGTCAACAACTGATTAATAGTTTGTTCCCTCTCATCATTC-CCGC 101244982 Query 9341 CA--TACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 || || ||| || | | ||| |||| || ||||| |||||||| || || ||||| Sbjct 101244983 CACCTA-AACCCGCTCCTCTCTGCCTTCCTACCGCATCTATCTCATCGATAAACACAATG 101245041 Query 9399 CATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCAC 9454 || || || |||| || ||||||| | ||| | |||||| || || || Sbjct 101245042 CAAGGCGCTTTCGATTTC----GCCTTTTCAAACAAATCCCTAACCCTAGATGCACCAAC 101245097 Query 9455 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9514 ||| ||||||| ||| || || | | || | ||| || || || || | ||| Sbjct 101245098 ACCTACAAACAACTCAACGAATTCCGACGCTGCACACGAGAAAAACGGCACCCCCGCTTC 101245157 Query 9515 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 ||| |||| ||| || || | ||| ||||| || || || || Sbjct 101245158 ACCTGCAACGGCCCGAGCCAAAAGGGTCTTCCCGGTCCCCGG 101245199 >seq9 Length=209865144 Score = 91.5 bits (100), Expect = 2e-13 Identities = 167/239 (70%), Gaps = 7/239 (3%) Strand=Plus/Plus Query 107167 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 107226 ||| || || ||||| || |||||||||||||| || | || || ||||| | ||| Sbjct 123174728 CTGAGGCCTGGGTGTCCCTGCATTGAAGAGGGTGGGAGAAGCATGTGTGAACCACCTTTG 123174787 Query 107227 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286 |||||| | || |||| | ||||||||||||||| || ||| || || | || Sbjct 123174788 TGACATCAAATGATAAGTCTTGATGACAGAATCAATGTCATCTTTGTGAATCCCAACTGC 123174847 Query 107287 CACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA--AGA 107344 || | ||| | ||| | ||| ||| |||||| | | || | || | || | || Sbjct 123174848 AACCCTCATCAGCATATGTTGAGGTCTTTCCACAACCTTCCCTTTGATC--TTCAACAGG 123174905 Query 107345 TA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCGCTTCGTAT 107402 || | || ||||||| ||||| | ||||| ||| || ||||| ||||||| |||||| Sbjct 123174906 TATGATC-TCTCAAGTGTTTTAAAGCCAAAATAATCATAATCAAAGTCCCG-ATCGTAT 123174962 >seq15 Length=171247636 Score = 89.7 bits (98), Expect = 6e-13 Identities = 142/203 (70%), Gaps = 3/203 (1%) Strand=Plus/Plus Query 117291 ACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTT 117350 |||||| ||||| || || | || || ||||| || || ||||| | || ||||| Sbjct 39549726 ACCCTCGTCTCGCGATATCAACTCGTTCGAGAACGTTAAACCCGGCATCAACCCACGCTT 39549785 Query 117351 CTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAA 117410 ||||||||| ||||||| || || || || ||||| || || || ||||| ||||| Sbjct 39549786 CTTCAACCAGAAAATAGCACAAAAGCTACCAGAAAAGAATATTCCTTCAACACAGGCAAA 39549845 Query 117411 CGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGCCCATTT 117470 |||| | | ||| || || || || ||| | ||| ||||| ||||| || Sbjct 39549846 GGCAATTATTCTCTCTGCAAACGATTCTGA---ACCGTCGATCCACTTCATCGCCCAATT 39549902 Query 117471 CGCCTTCTTCTCAATACATGGTA 117493 |||||| |||| | |||||||| Sbjct 39549903 CGCCTTTTTCTGTACACATGGTA 39549925 Score = 89.7 bits (98), Expect = 6e-13 Identities = 166/237 (70%), Gaps = 5/237 (2%) Strand=Plus/Plus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TG 107226 || ||| ||||||| || |||||||| ||||| || | || ||| ||||| |||| || Sbjct 145648141 TGAGGTGTTGGTGTCCCTGCATTGAATAGGGTGGGAGAAGCATGAGTGAACC-ACCTCTG 145648199 Query 107227 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286 |||||| | || |||| | || ||||||||||| || ||| || || | | Sbjct 145648200 TGACATCAAATGATAAGTCTTGATTACCGAATCAATGTCATCTTTGTGAATCCCAACCGA 145648259 Query 107287 CACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGAT 107345 || | ||| ||||| | ||| ||| ||| || | | || || | | | | |||| Sbjct 145648260 AACCCTCATCAACATATGTTGAGGTCTTT-CAACAACCTTCCCTCCAATCTTCAATAGAT 145648318 Query 107346 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCGCTTCGTAT 107402 | | ||||||||||||| | |||||| ||| || ||||| ||||||| |||||| Sbjct 145648319 ATGACCTCTCAAGGGTTTTAAAACCAAAATAATCATAATCAAAGTCCCG-ATCGTAT 145648374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589969531366720