Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq15 176 5e-39 seq9 104 3e-17 seq12 84.2 2e-11 >seq15 Length=171247636 Score = 176 bits (194), Expect = 5e-39 Identities = 566/871 (65%), Gaps = 7/871 (1%) Strand=Plus/Plus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 || ||||| || |||| || || ||||| ||||| || || |||| || || || | Sbjct 39549415 TTCTGATACTCCCCAACCCTCTTCTCAAAAAAATTCGTCTTCCCCTGCAACGAAATCAAC 39549474 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||||| ||||||| ||||| || ||| | ||| | ||||||| || Sbjct 39549475 TCCATCCAATCAAACGGATTCGACACGCCATACAATTTCTCACATCCTAACGACCCCAGC 39549534 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 | |||||||| ||||| | |||||| |||||| ||| |||||| || | || Sbjct 39549535 AACCTATCCGCAACAAACTCAATATACTGACTCATCAACCCACCATTCATCCCAACCAAC 39549594 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909 | |||| ||||| || ||| || || || | || || || | | ||| Sbjct 39549595 CCACAGGGTAAGGCATCACAAACAAACTCCCTCTCAATCTCCACCGCATCCGCCACAATC 39549654 Query 18910 GATACAACTCTATCTTCATT-AGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAA 18968 | || | || ||| | | |||| || | || | ||| ||| || || || Sbjct 39549655 CCTTTCACCCGCTCCTCACTCAACTTTGTATTCAACAACTT-ATACAGCAAGCAAGCGAA 39549713 Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 ||| ||||| | |||||||||| |||||| || || || || |||||||| ||||| Sbjct 39549714 ATCGCAATGCAAACCCTCGTCTCGCGATATCAACTCGTTCGAGAACGTTAAACCCGGCAT 39549773 Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGAT-CCAGAAAAGAATATACCTT 19087 || || | || || |||||||| |||| | |||| | | |||||||||||||| |||| Sbjct 39549774 CAACCCACGCTTCTTCAACCAGAAAATAGCA-CAAAAGCTACCAGAAAAGAATATTCCTT 39549832 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATT 19147 | || ||||| |||| || ||| ||| || ||| | || | | ||||| | Sbjct 39549833 CAACACAGGCAAAGGCAATTATTCTCTCTGCA-AAC--GATTCTGAACCGTCGATCCACT 39549889 Query 19148 TCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGAT 19207 ||| ||||||| ||||| || | ||||||||| |||||||| |||| | || | | Sbjct 39549890 TCATCGCCCAATTCGCCTTTTTCTGTACACATGGTATTGTCTCAATAGCACGGAACAAAC 39549949 Query 19208 ACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAAT 19267 | ||| | | |||||| | || | || | || |||||||||||||| || | Sbjct 39549950 GGTTTTTTTCAACAGAATCTTTGATGTACGATTCCAACAGCAAACTGTACATTTCAGAGT 39550009 Query 19268 GAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTT 19327 | ||||| || || || || ||||| |||||||| | || || | |||||||||| Sbjct 39550010 GGATATTCTCAATCGCGATTTGAAAGCCGTAAAAGGCACGCGCCTCGGAGATCTGTACTT 39550069 Query 19328 CACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATG 19387 | | || | | | | ||||| || || || || || || || || | Sbjct 39550070 CTTTCATGAAGCGGCCAGCGAGGTTTTCCAATACAATGCCGTCTGATGCAGCGAAGAAGG 39550129 Query 19388 CTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATAT 19447 | | ||| || |||| || || ||| | |||||| | | ||| | | | Sbjct 39550130 CGAGTACGTGAGTAATGAAGTGACGTTCGTTGTCGGTTAAGGAGTCCCAGTGTTGTTGGT 39550189 Query 19448 CTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGT 19507 ||| ||||| || |||||||| | ||||| || || || || || ||||| ||||| | Sbjct 39550190 CTTGTGATAAGTCGACTTCTTCTGCGGTCCAGAATGAGGCTTCGGCCTTTTTGTACATTT 39550249 Query 19508 TCCATATATCACGATATTGTATAGGAAATAT 19538 ||| || | | ||||| || || || || Sbjct 39550250 CCCAGATTTGTGGGTATTGGATTGGGAACAT 39550280 Score = 104 bits (114), Expect = 3e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 || |||| ||| |||| || ||||| |||||| | ||||| ||| ||| | ||| | | Sbjct 145648153 GTCCCTGCATTGAATAGGGTGGGAGAAGCATGAGTGAACCACCTCTGTGACATCAAATGA 145648212 Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719 || || | || || ||||| || || || || || || | || || | ||| ||| Sbjct 145648213 TAAGTCTTGATTACCGAATCAATGTCATCTTTGTGAATCCCAACCGAAACCCTCATCAAC 145648272 Query 48720 ATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAAT 48779 |||| ||||||||||||||||| || || ||||| |||||||| | || | Sbjct 145648273 ATATGTTGAGGTCTTTCAACAACCTTCCCTCCAATCTTCAATAGATATGACCTCTCAAGG 145648332 Query 48780 GTTTTAAAACCAAAATA 48796 ||||||||||||||||| Sbjct 145648333 GTTTTAAAACCAAAATA 145648349 >seq9 Length=209865144 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 |||||||||||| | ||| | ||| |||| ||| | || | |||||||||| ||| || Sbjct 123174120 ACCTCCTTGATCAACATAACGGGCGGTATCGTTGAAGACACGCAACATTGGGATAATGCC 123174179 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||| ||| ||||||| || || || ||||| || | | | || ||| || || Sbjct 123174180 ATTGGATGTACCATTTGTCCCGCGTATGTAACTCCCTGTCGAACGAATGTTATGAACAGA 123174239 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 || ||| || |||||||| ||| || | |||||| || | || ||||| || Sbjct 123174240 AACACCAATCCCACCTGCTGATTTGCTGATAACAGCACATTCCTTCAAAGTGTCATATAT 123174299 Query 48539 TCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACT 48580 ||||| || ||||||||| |||| ||| || |||||||| Sbjct 123174300 GCCTTCAATGCTATCATCTTTCATGCATAACAGGAAACAACT 123174341 Score = 89.7 bits (98), Expect = 6e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 || |||| ||| || | || ||||| ||||| | ||||| | | ||| | ||| | | Sbjct 123174741 GTCCCTGCATTGAAGAGGGTGGGAGAAGCATGTGTGAACCACCTTTGTGACATCAAATGA 123174800 Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719 || || | || |||||||| || || || || || || | | || | ||| | | Sbjct 123174801 TAAGTCTTGATGACAGAATCAATGTCATCTTTGTGAATCCCAACTGCAACCCTCATCAGC 123174860 Query 48720 ATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAAT 48779 |||| |||||||||||| |||| || || || ||||| || |||||| | || | | Sbjct 123174861 ATATGTTGAGGTCTTTCCACAACCTTCCCTTTGATCTTCAACAGGTATGATCTCTCAAGT 123174920 Query 48780 GTTTTAAAACCAAAATA 48796 |||||||| |||||||| Sbjct 123174921 GTTTTAAAGCCAAAATA 123174937 >seq12 Length=166489593 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/108 (78%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 18957 CAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGT 19016 || ||| ||||| ||||||||||| ||||||||||| ||| | |||||| || || || Sbjct 16892781 CAGACAAGCAAAGTCACAATGTAGACCCTCGTCTCTGGATATAAGTTCATTTGAGAAAGT 16892840 Query 19017 TAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAA 19064 || || ||||| | |||||| || |||| ||| || || | |||||| Sbjct 16892841 CAACCCTGGCATTAATCCTCTCTTCTTTAGCCAAAAAATTG-AGCAAA 16892887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562098063721920