Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq15 114 2e-20 seq12 89.7 6e-13 >seq15 Length=171247636 Score = 114 bits (126), Expect = 2e-20 Identities = 245/360 (68%), Gaps = 17/360 (5%) Strand=Plus/Plus Query 37164 TTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTA 37223 ||| ||| || || || ||||| ||||| ||||| || |||| |||||| || || Sbjct 39549694 TTATACAGCAAGCAAGCGAAATCGCAATGCAAACCCTCGTCTCGCGATATCAACTCGTTC 39549753 Query 37224 GAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT 37283 || || ||||| || ||||| || || | || || | ||| || || || |||||| | Sbjct 39549754 GAGAACGTTAAACCCGGCATCAACCCACGCTTCTTCAACCAGAAAATAGCA-CAAAAGCT 39549812 Query 37284 -CCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGA 37342 ||||||||||| || |||||||| ||||| || | | | | | | | | | Sbjct 39549813 ACCAGAAAAGAATATTCCTTCAACACAGGCAAAGGCAATTATTC-TCT-CTGCA-----A 39549865 Query 37343 ACTATAATCAGAA------ATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTC 37396 || || || ||| ||||| || | | ||||| |||||| | |||||| Sbjct 39549866 ACGAT--TCTGAACCGTCGATCCACTTCATCGCCCAATTCGCCTTTTTCTGTACACATGG 39549923 Query 37397 AATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATC 37456 ||||| ||||| || || | | ||||||||| || |||| | || || | || Sbjct 39549924 TATTGTCTCAATAGCACGGAACAAACGGTTTTTTTCAACAGAATCTTTGATGTACGATTC 39549983 Query 37457 AATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAA 37516 | || ||||| |||||||||||||| ||||| ||||| || || ||||| || ||||| Sbjct 39549984 CAACAGCAAACTGTACATTTCAGAGTGGATATTCTCAATCGCGATTTGAAAGCCGTAAAA 39550043 >seq12 Length=166489593 Score = 89.7 bits (98), Expect = 6e-13 Identities = 94/122 (77%), Gaps = 4/122 (3%) Strand=Plus/Plus Query 37175 ACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAA 37234 ||| ||||| |||||||||| ||| || ||||| ||| | |||||| || || || || Sbjct 16892784 ACAAGCAAAGTCACAATGTAGACCCTCGTCTCTGGATATAAGTTCATTTGAGAAAGTCAA 16892843 Query 37235 TCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAA 37294 ||||||||||| ||||| || || | |||||| |||| ||||||| | ||||| || Sbjct 16892844 CCCTGGCATTAATCCTCTCTTCTTTAGCCAAAAAATTG-AGCAAAAG---CTGAAAAAAA 16892899 Query 37295 AA 37296 || Sbjct 16892900 AA 16892901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592305486749120