Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1 113 3e-20 seq4 107 1e-18 seq12 96.9 3e-15 seq16 95.1 9e-15 seq15 87.8 1e-12 seq11 84.2 2e-11 >seq1 Length=153905722 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || ||||| || ||||| | || | ||| |||| |||||||| ||||||||||| Sbjct 17865220 TCCTTCTGAATGTTATAATCTGCAAGTGTGCGACCGTCTTCCAACTGTTTACCGGCAAAG 17865161 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| | ||| || || | |||| ||||||||||| |||||| || ||| | Sbjct 17865160 ATCAACCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCTTGAATCTTCGCCTTGACATTA 17865101 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | || | || || ||| ||||||| || ||||| || || |||||||| || ||| Sbjct 17865100 TCAACTGTATCAGAACTCTCTACCTCCAAAGTGATCGTCTTCCCGGTCAAAGTCTTGACA 17865041 Query 48756 AAAATCTGCATC 48767 |||||||||||| Sbjct 17865040 AAAATCTGCATC 17865029 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || | || || ||||||||| ||||| || || ||||| || ||||| | Sbjct 17865028 CCACCTCTCAACCTCAGCACCAAATGAAGCGTAGATTCCTTCTGAATGTTATAATCCGCC 17864969 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATC-CGTGGG 48658 | | | || | || |||| ||| ||||||||||| ||||| | |||||| || ||||| Sbjct 17864968 AAAGTCCGCCCATCTTCCAGCTGTTTACCGGCAAAGATCAGCCTCTGTTGGTCTGGTGGG 17864909 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | | || || || || ||||||| || ||| | | | || || ||| || Sbjct 17864908 ATC-CCTTCTTTATCTTGAATCTTTGCCTTGACATTGTCAATCGTATCCGAGCTCTCAAC 17864850 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || ||||| ||||| || || ||||| |||||||| Sbjct 17864849 TTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTAACAAAGATCTGCAT 17864802 >seq4 Length=178899001 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| |||| |||||||| ||| || || ||| ||||| || |||||||| | Sbjct 81195861 CCTCCCCTCAGCCTCAACACCAGATGCAGAGTCGACTCCTTTTGGATGTTGTAATCCGCA 81195920 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | | |||| |||||||| ||||| ||||| || || | ||| || |||| || Sbjct 81195921 AGAGTCCTGCCGTCTTCCAACTGTTTACCCGCAAAGATGAGCCTCTGCTGGTCCGGTGGG 81195980 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| |||||| ||| || | | || || || ||| ||| Sbjct 81195981 ATACCCTCCTTGTCCTGGATCTTTGCTTTCACGTTGTCGATAGTGTCGGAGCTCTCGACC 81196040 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || || || ||||| || || ||||| || ||||| Sbjct 81196041 TCCAAGGTGATGGTCTTACCGGTCAAGGTCTTAACAAAGATTTGCAT 81196087 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || ||| |||||||| |||||||| | ||| | | |||| ||| Sbjct 81196335 ACCAAATGAAGAGTTGACTCCTTTTGAATGTTGTAATCGGCAAGAGTCCTGCCGTCCTCC 81196394 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 ||||||||||| || || |||| || |||||| || | || | ||||||||||| Sbjct 81196395 AACTGCTTACCAGCGAAGATCAATCTCTGTTGGTCTGGTGGGATACCCTCCTTGTCTTGG 81196454 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | | || || || ||||| | |||||||| || Sbjct 81196455 ATCTTGGCCTTGACATTATCGATGGTGTCGGAGCTTTCGACCTCAAGGGTAATCGTCTTG 81196514 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | ||||| || || || ||||| Sbjct 81196515 CCGGTTAGGGTTTTGACGAAGATTTGCAT 81196543 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| ||||| || |||||||| | | | || |||| ||||| ||||||||||| || Sbjct 81196124 CTCCTTTTGGATGTTGTAATCGGCCAAGGTGCGGCCGTCTTCCAATTGCTTACCGGCGAA 81196183 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||||| ||||| || || | || | ||||||||||| ||||||| ||| || Sbjct 81196184 GATCAGACGCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGAATCTTTGCTTTGACGTT 81196243 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | || || || ||||| | || || || || || |||||||| || || Sbjct 81196244 ATCGATGGTATCGGAGCTTTCGACCTCAAGGGTGATGGTCTTACCAGTCAAAGTCTTCAC 81196303 Query 48755 AAAAATCTGCAT 48766 ||| || ||||| Sbjct 81196304 AAAGATTTGCAT 81196315 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || || || || ||||||| || | || | || |||| |||| Sbjct 81195657 TGCAGAGTGGACTCCTTCTGGATGTTATAATCAGCAAGCGTACGCCCATCTTCCAGCTGC 81195716 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || ||||| |||| | ||| || || | |||| ||||||||||| |||||| Sbjct 81195717 TTGCCCGCAAAGATCAACCTCTGCTGGTCTGGTGGAATCCCCTCCTTGTCCTGAATCTTC 81195776 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | | | || || |||||| |||| ||||| || ||||| ||| Sbjct 81195777 GCCTTCACATTATCGATTGTGTCCGAGCTCTCCACTTCCAAAGTAATGGTCTTTCCGGTC 81195836 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 || || || || || |||||||| Sbjct 81195837 AACGTCTTCACGAAGATCTGCAT 81195859 >seq12 Length=166489593 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 ||||||||||||| ||| || || ||| || || || |||||||| | ||| ||| Sbjct 157664024 AGCCGCAACACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAATCCGCTAGGGTTCTG 157664083 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | ||| || ||||| || || || || || || |||| |||| ||| ||| Sbjct 157664084 CCGTCTTCGAGCTGTTTTCCGGCGAAAATTAGCCGTTGCTGGTCCGGTGGAATGCCTTCC 157664143 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || || | | | || || | || ||||||| ||| Sbjct 157664144 TTGTCCTGGATCTTTGCCTTCACGTTGTCGATCGTGTCGGAGGATTCGACCTCCAACGTG 157664203 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || ||||| | ||||| || || |||||||| Sbjct 157664204 ATCGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 157664241 >seq16 Length=188620566 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| | || |||||| | ||| || || || ||||||||||||||||||| Sbjct 106906667 CCACCCCTCAACCTCAACACAAGATGCAGAGTCGATTCCTTTTGAATATTGTAATCAGCC 106906608 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || || | |||||| || || || |||| | ||| || |||| ||| Sbjct 106906607 AGCGTACGCCCATCCTCGAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCCGGTGGA 106906548 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||| || |||||| || ||| | | | || || ||| ||| Sbjct 106906547 ATCCCCTCCTTATCTTGAATCTTCGCCTTCACATTGTCAATCGTATCCGAACTCTCGACC 106906488 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| |||||||| || || ||||| || || || || |||||||| Sbjct 106906487 TCCAGAGTAATCGTCTTCCCAGTCAACGTCTTGACGAATATCTGCAT 106906441 >seq15 Length=171247636 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || |||| | ||| | ||| || ||| ||| || ||||| ||||| || | | Sbjct 34348589 CCTCCTCTAAGCCTGAGCACAAGATGGAGTGTGGACTCCTTCTGAATGTTGTAGTCGGCT 34348530 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | || | || || | ||| ||||||||||| |||| |||||| || || | || Sbjct 34348529 AAAGTACGGCCATCTTCAAGCTGTTTACCGGCAAAGATCAATCGCTGCTGGTCAGGTGGG 34348470 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||| || || ||||| || ||| | | | | ||||| || || Sbjct 34348469 ATGCCCTCTTTATCTTGGATCTTAGCCTTGACATTATCAATGGTGTCTGAGCTTTCAACT 34348410 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||| || || || ||||| || ||||| || ||||| ||||||||| Sbjct 34348409 TCCAAAGTGATTGTCTTTCCGGTTAAAGTCTTAACAAAGATCTGCATC 34348362 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || ||| || || || || ||||| |||| ||| | ||| Sbjct 34231633 AGACGAAGCACCAAATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCAAGAGTGCGA 34231574 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTC 48667 |||| || | ||||| || ||||| || || | |||||| |||| ||||| | ||||| Sbjct 34231573 CCGTCCTCAAGTTGCTTGCCAGCAAAGATGAGCCTCTGTTGGTCCGGTGGGATC-CCCTC 34231515 Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727 |||||| ||||| ||| ||| | | | || || || || |||| || Sbjct 34231514 CTTGTCCTGGATCTTGGCTTTAACATTGTCGATGGTATCGGAGCTTTCGACTTCCAAGGT 34231455 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| ||| || || ||||||||||| Sbjct 34231454 GATGGTCTTCCCGGTCAGAGTCTTAACGAAAATCTGCAT 34231416 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || ||| || || || || ||||| |||| ||| | ||| Sbjct 34349036 AGACGAAGCACCAAATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCAAGAGTGCGA 34348977 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTC 48667 |||| || | ||||| || ||||| || || | |||||| |||| ||||| | ||||| Sbjct 34348976 CCGTCCTCAAGTTGCTTGCCAGCAAAGATGAGCCTCTGTTGGTCCGGTGGGATC-CCCTC 34348918 Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727 |||||| ||||| ||| ||| | | | || || || || |||| || Sbjct 34348917 CTTGTCCTGGATCTTGGCTTTAACATTGTCGATGGTATCGGAGCTTTCGACTTCCAAGGT 34348858 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| ||| || || ||||||||||| Sbjct 34348857 GATGGTCTTCCCGGTCAGAGTCTTAACGAAAATCTGCAT 34348819 >seq11 Length=168460249 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 48557 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTC 48616 ||| | ||| ||||| ||| || || || || ||||| | | | | ||| | || || Sbjct 109718082 CACAAGATGAAGCGTAGACTCCTTCTGGATGTTATAATCCGCCAAAGTACGACCATCATC 109718141 Query 48617 CAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCT 48676 ||||| || |||||||| |||| ||||| || || | || | |||||| || || Sbjct 109718142 TAACTGTTTTCCGGCAAAGATCAACCGCTGCTGGTCTGGCGGGATGCCCTCTTTATCCTG 109718201 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 |||||| || || | | | || || || ||||||||||| ||| || || || Sbjct 109718202 AATCTTGGCCTTGACGTTATCGATAGTATCCGAACTCTCCACCTCCAACGTGATAGTCTT 109718261 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||| |||| || || ||||| || |||||| Sbjct 109718262 TCCGGTCAGGGTCTTCACAAATATTTGCATC 109718292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380930505989544