Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq15 118 2e-21 seq14 118 2e-21 >seq15 Length=171247636 Score = 118 bits (130), Expect = 2e-21 Identities = 373/570 (65%), Gaps = 15/570 (3%) Strand=Plus/Plus Query 48121 ATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGA 48180 ||| |||| ||| || || || | ||||| || ||||| || || | | |||| || Sbjct 39549696 ATACAGCAAGCAAGCGAAATCGCAATGCAAACCCTCGTCTCGCGATATCAACTCGTTCGA 39549755 Query 48181 GAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAG-C 48239 ||| | ||| ||||| | ||| | || || | ||||||||| || | |||| | Sbjct 39549756 GAACGTTAAACCCGGCATCAACCCACGCTTCTTCAACCAGAAAATAGCA-CAAAAGCTAC 39549814 Query 48240 CAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGT 48299 |||| ||||| || || || || || || || | | |||||| | || || | Sbjct 39549815 CAGAAAAGAATATTCCTTCAACACAGGCAAAGGCAATTATTCTCTCTGCAAACGA----T 39549870 Query 48300 TCTTGTCTGA-GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTC 48358 ||| | | |||||| | |||||| | ||||| |||| | ||||| || ||| Sbjct 39549871 TCTGAACCGTCGATCCACTTCATCGCCCAATTCGCCTTTTTCTGTACACATGGTATTGTC 39549930 Query 48359 TCTATGGCCCGGAAGA---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGC 48415 || || || ||||| | | || || ||| | | || | || | | | Sbjct 39549931 TCAATAGCACGGAACAAACGGTTTTTT---TCAACAGAATCTTTGATGTACGATTCCAAC 39549987 Query 48416 AGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCC 48475 ||| |||||| |||||||| | |||||| || ||||| || || ||||| ||||| Sbjct 39549988 AGCAAACTGTACATTTCAGAGTGGATATTCTCAATCGCGATTTGAAAGCCGTAAAAGGCA 39550047 Query 48476 CTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTAT 48534 | ||||| | | ||| |||||| | ||| | ||||| || || || || || Sbjct 39550048 CGCGCCTCGGAGATCTGTACTTCTTTCATGAAGCGG-CCAGCGAGGTTTTCCAATACAAT 39550106 Query 48535 CCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGT 48594 || ||||| ||||| |||||||| || || || ||| ||| || || ||||||| ||| Sbjct 39550107 GCCGTCTGATGCAGCGAAGAAGGCGAGTACGTGAGTAATGAAGTGACGTTCGTTGTCGGT 39550166 Query 48595 GAGAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGA 48654 | | | |||| ||| ||||| | ||| |||||||| | |||||||| || Sbjct 39550167 TAAGGAGTCCCAGTGTTGTTGGTCTTGTGATAAGTCGACTTCTTCTGCGGTCCAGAATGA 39550226 Query 48655 CGCGAGTGCTTTTTTGTACATGCCCCATAT 48684 || || ||||||||||| |||| || Sbjct 39550227 GGCTTCGGCCTTTTTGTACATTTCCCAGAT 39550256 >seq14 Length=174509413 Score = 118 bits (130), Expect = 2e-21 Identities = 369/567 (65%), Gaps = 11/567 (2%) Strand=Plus/Minus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 |||| || ||| || || || | ||| || ||||| || || ||| | |||| ||| Sbjct 142133090 TAGATCAAGCACGCGAAATCGCAGTGTAAACCTTCATCTCGTGAGATTAATTCGTTTGAG 142133031 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 || || || ||||| | ||| | || ||| |||||||| || || ||| || Sbjct 142133030 AATGTCAGTCCCGGCATTAACCCGCGCTTTTTCAGCCAGAATATCGCACAGAAGCTTCCT 142132971 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC 48301 |||||||| || || || || || || || ||| || |||| | || || || Sbjct 142132970 GAGAAGAATATTCCTTCGACGCAGGCAAAAGCAATGATCCGCTCTGCAAACGATTCGGAT 142132911 Query 48302 TTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCT 48361 ||| |||||| |||||||| | || ||||||| |||||| || || || || Sbjct 142132910 CCGTC---GATCCATTTCAGCGCCCAATTGGCTTTCTTCTGGATGCAGGGGATGGTTTCA 142132854 Query 48362 ATGGCCCGGAAGAGC---TTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGC 48418 || || || || || ||||| ||| | || | |||| ||| | | Sbjct 142132853 ATCGCGCGAAATAGACGATTCTTT---TCAGTGGAATCTTTGATGTAGGATTCGAGTAAC 142132797 Query 48419 TTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTG 48478 ||||||||| ||||| | || || || ||||| || || |||||||| || | Sbjct 142132796 AGACTGTACATCTCGGAGTGGATGTTTTCAATGGCGATTTGAAAGCCGTAGAACGCACGC 142132737 Query 48479 GCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCC 48537 ||||| | ||| ||||| | ||||| || || || || || ||| || || Sbjct 142132736 GCCTCGGCGATCTGGACTTCCTTCATGAATCGG-CCGGCGAGGTTTTCGAGGACGATGCC 142132678 Query 48538 ATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG 48597 |||||||| || |||||||| ||||| || | | ||| ||||| ||| || ||| || Sbjct 142132677 GTCTGAAGCGGCGAAGAAGGCGAGGACGTGAGTGATGAAGTGGCGTTCGCCGTCGGTTAG 142132618 Query 48598 AGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 | | ||| | ||||| ||||| |||||||| | |||||||| || || Sbjct 142132617 GGTTTCCCATTGACGGTGGTCTTGTGAGAGGTCTACTTCTTCTGCTGTCCAGAATGAGGC 142132558 Query 48658 GAGTGCTTTTTTGTACATGCCCCATAT 48684 |||||||||||||| |||| || Sbjct 142132557 CTCGGCTTTTTTGTACATTTCCCAGAT 142132531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931515007723520