Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq11 104 2e-17 seq1 95.1 1e-14 >seq11 Length=168460249 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| ||||| || || || |||||||| || || || || ||| ||| ||| Sbjct 109472002 AATGCAGATATTCGTCAAGACCTTAACGGGGAAGACGATCACTCTGGAAGTGGAGAGTTC 109471943 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || || | || ||||| |||||| ||||||||||| | || || || Sbjct 109471942 GGATACTGTTGATAATGTCAAGGCAAAAATTCAGGACAAAGAGGGGATCCCACCTGACCA 109471883 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | | ||||||||||| ||||||||||| ||| | ||| | || |||||||| Sbjct 109471882 GCAGCGGTTAATCTTTGCGGGTAAACAATTGGATGATGGTCGGACTCTTGCTGATTATAA 109471823 Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757 |||||| ||||| ||||| || ||| Sbjct 109471822 CATTCAGAAAGAGTCTACCCTTCAC 109471798 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| ||||| || || || || ||||| || || || || || || ||| Sbjct 109717661 ATGCAGATATTCGTCAAGACCTTGACGGGGAAGACGATCACTCTAGAGGTCGAGAGTTCG 109717602 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || || | || ||||| |||||| ||||||||||| | || || || Sbjct 109717601 GATACTGTTGATAATGTCAAGGCAAAAATTCAGGACAAAGAGGGGATCCCGCCCGACCAG 109717542 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | | ||||||||||| ||||||||||| ||| | ||| | || ||||||||| Sbjct 109717541 CAGCGGTTAATCTTTGCGGGTAAACAATTGGATGATGGTCGGACTCTTGCTGATTATAAC 109717482 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 ||||| ||||| ||||| || ||| Sbjct 109717481 ATTCAGAAAGAGTCTACCCTTCAC 109717458 >seq1 Length=153905722 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || || || || || ||||| || ||| || || Sbjct 17864802 ATGCAGATCTTTGTTAAGACGTTGACTGGAAAGACCATCACTCTTGAAGTTGAGAGCTCG 17864861 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | | || ||||| ||| || || ||||| || | || ||| ||| Sbjct 17864862 GATACGATTGACAATGTCAAGGCAAAGATTCAAGATAAAGAAGGGATCCCACCAGACCAA 17864921 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| || |||||||| || ||||| |||||||| ||| |||| ||||||||| Sbjct 17864922 CAGAGGCTGATCTTTGCCGGTAAACAGCTGGAAGATGGGCGGACTTTGGCGGATTATAAC 17864981 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| || |||||||| || || |||| | || || |||| ||||| Sbjct 17864982 ATTCAGAAGGAATCTACGCTTCATTTGGTGCTGAGGTTGAGAGGTGGGAT 17865031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425396877899112