Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq17 120 4e-22 seq9 91.5 2e-13 seq15 89.7 6e-13 >seq17 Length=214723238 Score = 120 bits (132), Expect = 4e-22 Identities = 275/412 (67%), Gaps = 4/412 (1%) Strand=Plus/Plus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 || || ||| | ||| |||| ||||| | | || |||||| | || || || Sbjct 138181338 GTTGAGTTTTTGAAGAAACCGGAGAGGTTTACTGCTGTTGGTGCTAGAATTCCAAAGGGT 138181397 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | ||||| | |||| ||||| || || || || || | || ||| || || ||| Sbjct 138181398 GTTCTTCTTGTGGGTCCCCCAGGAACAGGGAAAACACTATTGGCTAAAGCTATTGCTGGT 138181457 Query 175357 GAATCAAATGTCCCATTCATC--CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTG 175414 ||| || |||||| ||| || || | | || || ||||| || |||||||||| Sbjct 138181458 GAAGCAGGTGTCCCCTTCTTCTCCATTTCAGGTTCGGAA--TTTGTTGAAATGTTTGTTG 138181515 Query 175415 GTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTA 175474 |||| |||||| ||||||||| ||||| || ||| || || ||| ||| |||| Sbjct 138181516 GTGTTGGTGCCTCAAGGGTTCGAGATCTGTTCAAAAAGGCAAAAGAGAATGCACCGTGTA 138181575 Query 175475 TTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAG 175534 | || || ||||||| ||||||||||| || | ||| | | | ||| | || Sbjct 138181576 TCGTATTTGTTGATGAAATTGATGCGGTTGGGAGACAAAGAGGAACGGGTATTGGAGGAG 138181635 Query 175535 CAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACA 175594 ||||| || ||||||||||| |||| || || | || || |||||||| || || Sbjct 138181636 GGAATGATGAAAGAGAACAAACGCTTAACCAGCTTTTGACTGAAATGGATGGGTTCGAAG 138181695 Query 175595 ATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 | || || || | || |||||||||| || |||| || || || || Sbjct 138181696 GGAACACAGGTATCATTGTAGTTGCGGCCACCAACCGCGCAGACATTCTAGA 138181747 Score = 113 bits (124), Expect = 5e-20 Identities = 391/608 (64%), Gaps = 4/608 (1%) Strand=Plus/Minus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290 ||| |||| || ||| | ||| |||||||||| | | || |||||| ||| ||| Sbjct 143474756 GAGGTTGTTGAGTTTTTAAAGAAACCCGAGAGGTTTACTGCTGTTGGTGCTCGGATTCCC 143474697 Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350 || | ||||| | |||| || || || || || || || || || || || Sbjct 143474696 AAGGGTGTTCTTCTTGTGGGTCCCCCGGGAACAGGTAAAACTCTGCTGGCTAAGGCTATT 143474637 Query 175351 GCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTT 175410 || |||||| | ||||||||| || | || | | | ||||| ||||||||| Sbjct 143474636 GCTGGTGAAGCTGGTGTCCCATTTTTCTCGATTTCCGGTTCGGAATTTGTTGAGATGTTT 143474577 Query 175411 GTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCA 175470 |||||||| |||||| || || || || || || | | || || ||| ||| Sbjct 143474576 GTTGGTGTTGGTGCCTCGAGAGTCCGGGACCTTTTCAAGAAGGCGAAAGAGAATGCACCG 143474517 Query 175471 TGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTA 175528 |||||||| || ||||||| || |||||||| || | ||| | | || || | | | Sbjct 143474516 TGTATTGTGTTTGTTGATGAAATCGATGCGGTTGGGAGACAAAGAGGGGCGGGTATCGGA 143474457 Query 175529 TGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCT 175588 || | ||||| || |||||||||| |||| || || | ||||| ||||| || | Sbjct 143474456 GGC--GGGAATGATGAACGAGAACAAACGCTTAACCAGCTTTTGACCGAAATGGACGGGT 143474399 Query 175589 TTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATG 175648 |||| | || || || | || ||||||| || || || | || || || || Sbjct 143474398 TTGAAGGAAACACGGGTATCATTGTAGTTGCGGCTACCAACCGTGCAGACATTCTAGACT 143474339 Query 175649 ACGCCCTCCTTCGCCCGGGTCGTTTTGATCGCAAGATCCAAGTGGGTCTTCCAAGTGTGC 175708 ||| | | | ||||| | |||||| | || | || | | ||||| ||| | Sbjct 143474338 CTGCCTTATTGAGACCGGGAAGATTTGATAGACAGGTATCGGTTGATGTTCCAGATGTCC 143474279 Query 175709 GAGGTCGCAAGAAGATTTTGGGAGTCCATGCCCGAGACAAGAAGTTATCTGAAGATGTCA 175768 |||| | | |||| || || ||||| | |||||||||| | ||||| Sbjct 143474278 GAGGAAGAACAGAGATCTTAAAGGTTCATGCTGGCAACAAGAAGTTTGACAAGGATGTTT 143474219 Query 175769 GTCTCGCGAGTATTGCCAAGCAAACAACTGGATTCTCTGGTGCGGAGTTGGCAAACCTTC 175828 ||| | | ||||||| | |||| ||||||| ||| || || | || || ||| Sbjct 143474218 CTCTTGAGGTGATTGCCATGAGAACACCTGGATTTAGTGGAGCTGATCTAGCGAATCTTT 143474159 Query 175829 TCAATGAA 175836 | || ||| Sbjct 143474158 TAAACGAA 143474151 >seq9 Length=209865144 Score = 91.5 bits (100), Expect = 2e-13 Identities = 167/239 (70%), Gaps = 7/239 (3%) Strand=Plus/Minus Query 75120 ATACGAAGCGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGC-TAT 75178 |||||| ||||||| ||||| || ||| ||||| | ||||| ||||||| || | || Sbjct 123174962 ATACGAT-CGGGACTTTGATTATGATTATTTTGGCTTTAAAACACTTGAGA-GATCATAC 123174905 Query 75179 CT--TCAACGGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCG 75236 || | || | || | || | | |||||| || || | ||| | ||| |||| | Sbjct 123174904 CTGTTGAA--GATCAAAGGGAAGGTTGTGGAAAGACCTCAACATATGCTGATGAGGGTTG 123174847 Query 75237 CAATCGGCATCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCC 75296 || | || || ||| || ||||||||||||||| | |||| || | |||||| | Sbjct 123174846 CAGTTGGGATTCACAAAGATGACATTGATTCTGTCATCAAGACTTATCATTTGATGTCAC 123174787 Query 75297 AAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG 75355 || | ||||| || || | || |||||||||||||| || ||||| || || ||| Sbjct 123174786 AAAGGTGGTTCACACATGCTTCTCCCACCCTCTTCAATGCAGGGACACCCAGGCCTCAG 123174728 >seq15 Length=171247636 Score = 89.7 bits (98), Expect = 6e-13 Identities = 142/203 (70%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 65009 TACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCT 65068 |||||||| | |||| |||||||| ||||| ||||| ||| | ||| || | Sbjct 39549925 TACCATGTGTACAGAAAAAGGCGAATTGGGCGATGAAGTGGATCGACGGT---TCAGAAT 39549869 Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCAT 65128 | || || ||| | | |||| ||||| ||||| || || || ||||| || || | Sbjct 39549868 CGTTTGCAGAGAGAATAATTGCCTTTGCCTGTGTTGAAGGAATATTCTTTTCTGGTAGCT 39549809 Query 65129 TCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATG 65188 | || ||||||| |||||||||||||| || | ||||| || || ||||| || | Sbjct 39549808 TTTGTGCTATTTTCTGGTTGAAGAAGCGTGGGTTGATGCCGGGTTTAACGTTCTCGAACG 39549749 Query 65189 AACTTATTTCCCGAGATGAGGGT 65211 | | || || ||||| |||||| Sbjct 39549748 AGTTGATATCGCGAGACGAGGGT 39549726 Score = 86.0 bits (94), Expect = 7e-12 Identities = 165/237 (70%), Gaps = 5/237 (2%) Strand=Plus/Minus Query 75120 ATACGAAGCGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATC 75179 |||||| ||||||| ||||| || ||| |||||| | ||||||||||||| | |||| Sbjct 145648374 ATACGAT-CGGGACTTTGATTATGATTATTTTGGTTTTAAAACCCTTGAGAGGTCATATC 145648316 Query 75180 T-TCAACGGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCA 75238 | | | | | || || | | || ||| || || | ||||| ||| |||| | Sbjct 145648315 TATTGAAGATTGGAGGGAAGGTTGTTG-AAAGACCTCAACATATGTTGATGAGGGTTTCG 145648257 Query 75239 ATCGGCATCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCA- 75297 | || || ||| || ||||||||||| || | |||| || | |||||| || Sbjct 145648256 GTTGGGATTCACAAAGATGACATTGATTCGGTAATCAAGACTTATCATTTGATGTCACAG 145648197 Query 75298 AGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 |||| ||||| ||| || | || ||||| |||||||| || ||||||| ||| || Sbjct 145648196 AGGT-GGTTCACTCATGCTTCTCCCACCCTATTCAATGCAGGGACACCAACACCTCA 145648141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596558205520640