Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12]
1,528 sequences; 3,027,844,945 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq17 120 4e-22
seq9 91.5 2e-13
seq15 89.7 6e-13
>seq17
Length=214723238
Score = 120 bits (132), Expect = 4e-22
Identities = 275/412 (67%), Gaps = 4/412 (1%)
Strand=Plus/Plus
Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296
|| || ||| | ||| |||| ||||| | | || |||||| | || || ||
Sbjct 138181338 GTTGAGTTTTTGAAGAAACCGGAGAGGTTTACTGCTGTTGGTGCTAGAATTCCAAAGGGT 138181397
Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356
| ||||| | |||| ||||| || || || || || | || ||| || || |||
Sbjct 138181398 GTTCTTCTTGTGGGTCCCCCAGGAACAGGGAAAACACTATTGGCTAAAGCTATTGCTGGT 138181457
Query 175357 GAATCAAATGTCCCATTCATC--CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTG 175414
||| || |||||| ||| || || | | || || ||||| || ||||||||||
Sbjct 138181458 GAAGCAGGTGTCCCCTTCTTCTCCATTTCAGGTTCGGAA--TTTGTTGAAATGTTTGTTG 138181515
Query 175415 GTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTA 175474
|||| |||||| ||||||||| ||||| || ||| || || ||| ||| ||||
Sbjct 138181516 GTGTTGGTGCCTCAAGGGTTCGAGATCTGTTCAAAAAGGCAAAAGAGAATGCACCGTGTA 138181575
Query 175475 TTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAG 175534
| || || ||||||| ||||||||||| || | ||| | | | ||| | ||
Sbjct 138181576 TCGTATTTGTTGATGAAATTGATGCGGTTGGGAGACAAAGAGGAACGGGTATTGGAGGAG 138181635
Query 175535 CAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACA 175594
||||| || ||||||||||| |||| || || | || || |||||||| || ||
Sbjct 138181636 GGAATGATGAAAGAGAACAAACGCTTAACCAGCTTTTGACTGAAATGGATGGGTTCGAAG 138181695
Query 175595 ATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646
| || || || | || |||||||||| || |||| || || || ||
Sbjct 138181696 GGAACACAGGTATCATTGTAGTTGCGGCCACCAACCGCGCAGACATTCTAGA 138181747
Score = 113 bits (124), Expect = 5e-20
Identities = 391/608 (64%), Gaps = 4/608 (1%)
Strand=Plus/Minus
Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290
||| |||| || ||| | ||| |||||||||| | | || |||||| ||| |||
Sbjct 143474756 GAGGTTGTTGAGTTTTTAAAGAAACCCGAGAGGTTTACTGCTGTTGGTGCTCGGATTCCC 143474697
Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350
|| | ||||| | |||| || || || || || || || || || || ||
Sbjct 143474696 AAGGGTGTTCTTCTTGTGGGTCCCCCGGGAACAGGTAAAACTCTGCTGGCTAAGGCTATT 143474637
Query 175351 GCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTT 175410
|| |||||| | ||||||||| || | || | | | ||||| |||||||||
Sbjct 143474636 GCTGGTGAAGCTGGTGTCCCATTTTTCTCGATTTCCGGTTCGGAATTTGTTGAGATGTTT 143474577
Query 175411 GTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCA 175470
|||||||| |||||| || || || || || || | | || || ||| |||
Sbjct 143474576 GTTGGTGTTGGTGCCTCGAGAGTCCGGGACCTTTTCAAGAAGGCGAAAGAGAATGCACCG 143474517
Query 175471 TGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTA 175528
|||||||| || ||||||| || |||||||| || | ||| | | || || | | |
Sbjct 143474516 TGTATTGTGTTTGTTGATGAAATCGATGCGGTTGGGAGACAAAGAGGGGCGGGTATCGGA 143474457
Query 175529 TGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCT 175588
|| | ||||| || |||||||||| |||| || || | ||||| ||||| || |
Sbjct 143474456 GGC--GGGAATGATGAACGAGAACAAACGCTTAACCAGCTTTTGACCGAAATGGACGGGT 143474399
Query 175589 TTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATG 175648
|||| | || || || | || ||||||| || || || | || || || ||
Sbjct 143474398 TTGAAGGAAACACGGGTATCATTGTAGTTGCGGCTACCAACCGTGCAGACATTCTAGACT 143474339
Query 175649 ACGCCCTCCTTCGCCCGGGTCGTTTTGATCGCAAGATCCAAGTGGGTCTTCCAAGTGTGC 175708
||| | | | ||||| | |||||| | || | || | | ||||| ||| |
Sbjct 143474338 CTGCCTTATTGAGACCGGGAAGATTTGATAGACAGGTATCGGTTGATGTTCCAGATGTCC 143474279
Query 175709 GAGGTCGCAAGAAGATTTTGGGAGTCCATGCCCGAGACAAGAAGTTATCTGAAGATGTCA 175768
|||| | | |||| || || ||||| | |||||||||| | |||||
Sbjct 143474278 GAGGAAGAACAGAGATCTTAAAGGTTCATGCTGGCAACAAGAAGTTTGACAAGGATGTTT 143474219
Query 175769 GTCTCGCGAGTATTGCCAAGCAAACAACTGGATTCTCTGGTGCGGAGTTGGCAAACCTTC 175828
||| | | ||||||| | |||| ||||||| ||| || || | || || |||
Sbjct 143474218 CTCTTGAGGTGATTGCCATGAGAACACCTGGATTTAGTGGAGCTGATCTAGCGAATCTTT 143474159
Query 175829 TCAATGAA 175836
| || |||
Sbjct 143474158 TAAACGAA 143474151
>seq9
Length=209865144
Score = 91.5 bits (100), Expect = 2e-13
Identities = 167/239 (70%), Gaps = 7/239 (3%)
Strand=Plus/Minus
Query 75120 ATACGAAGCGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGC-TAT 75178
|||||| ||||||| ||||| || ||| ||||| | ||||| ||||||| || | ||
Sbjct 123174962 ATACGAT-CGGGACTTTGATTATGATTATTTTGGCTTTAAAACACTTGAGA-GATCATAC 123174905
Query 75179 CT--TCAACGGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCG 75236
|| | || | || | || | | |||||| || || | ||| | ||| |||| |
Sbjct 123174904 CTGTTGAA--GATCAAAGGGAAGGTTGTGGAAAGACCTCAACATATGCTGATGAGGGTTG 123174847
Query 75237 CAATCGGCATCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCC 75296
|| | || || ||| || ||||||||||||||| | |||| || | |||||| |
Sbjct 123174846 CAGTTGGGATTCACAAAGATGACATTGATTCTGTCATCAAGACTTATCATTTGATGTCAC 123174787
Query 75297 AAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG 75355
|| | ||||| || || | || |||||||||||||| || ||||| || || |||
Sbjct 123174786 AAAGGTGGTTCACACATGCTTCTCCCACCCTCTTCAATGCAGGGACACCCAGGCCTCAG 123174728
>seq15
Length=171247636
Score = 89.7 bits (98), Expect = 6e-13
Identities = 142/203 (70%), Gaps = 3/203 (1%)
Strand=Plus/Minus
Query 65009 TACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCT 65068
|||||||| | |||| |||||||| ||||| ||||| ||| | ||| || |
Sbjct 39549925 TACCATGTGTACAGAAAAAGGCGAATTGGGCGATGAAGTGGATCGACGGT---TCAGAAT 39549869
Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCAT 65128
| || || ||| | | |||| ||||| ||||| || || || ||||| || || |
Sbjct 39549868 CGTTTGCAGAGAGAATAATTGCCTTTGCCTGTGTTGAAGGAATATTCTTTTCTGGTAGCT 39549809
Query 65129 TCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATG 65188
| || ||||||| |||||||||||||| || | ||||| || || ||||| || |
Sbjct 39549808 TTTGTGCTATTTTCTGGTTGAAGAAGCGTGGGTTGATGCCGGGTTTAACGTTCTCGAACG 39549749
Query 65189 AACTTATTTCCCGAGATGAGGGT 65211
| | || || ||||| ||||||
Sbjct 39549748 AGTTGATATCGCGAGACGAGGGT 39549726
Score = 86.0 bits (94), Expect = 7e-12
Identities = 165/237 (70%), Gaps = 5/237 (2%)
Strand=Plus/Minus
Query 75120 ATACGAAGCGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATC 75179
|||||| ||||||| ||||| || ||| |||||| | ||||||||||||| | ||||
Sbjct 145648374 ATACGAT-CGGGACTTTGATTATGATTATTTTGGTTTTAAAACCCTTGAGAGGTCATATC 145648316
Query 75180 T-TCAACGGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCA 75238
| | | | | || || | | || ||| || || | ||||| ||| |||| |
Sbjct 145648315 TATTGAAGATTGGAGGGAAGGTTGTTG-AAAGACCTCAACATATGTTGATGAGGGTTTCG 145648257
Query 75239 ATCGGCATCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCA- 75297
| || || ||| || ||||||||||| || | |||| || | |||||| ||
Sbjct 145648256 GTTGGGATTCACAAAGATGACATTGATTCGGTAATCAAGACTTATCATTTGATGTCACAG 145648197
Query 75298 AGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354
|||| ||||| ||| || | || ||||| |||||||| || ||||||| ||| ||
Sbjct 145648196 AGGT-GGTTCACTCATGCTTCTCCCACCCTATTCAATGCAGGGACACCAACACCTCA 145648141
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596558205520640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |