Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq14 208 9e-48 seq15 158 1e-32 >seq14 Length=174509413 Score = 208 bits (230), Expect = 9e-48 Identities = 224/294 (76%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||| || |||||||| || |||||||| || || | | |||| || | ||| Sbjct 142132781 GAGTGGATGTTTTCAATGGCGATTTGAAAGCCGTAGAACGCACGCGCCTCGGCGATCTGG 142132722 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || ||||||||||| |||||||| ||||| ||| ||||||||||| |||||||| Sbjct 142132721 ACTTCCTTCATGAATCGGCCGGCGAGGTTTTCGAGGACGATGCCGTCTGAAGCGGCGAAG 142132662 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || |||||||| |||| |||||||| ||| ||||| | || | |||| | |||| Sbjct 142132661 AAGGCGAGGACGTGAGTGATGAAGTGGCGTTCGCCGTCGGTTAGGGTTTCCCA-TTGACG 142132603 Query 869813 GT-GTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 || ||| |||||| || || || || ||||||| ||||||||||| |||||||| Sbjct 142132602 GTGGTCTTGTGAGAGGTCTACTTCTTCTGCTGTCCAGAATGAGGCCTCGGCTTTTTTGTA 142132543 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTT 869925 ||| ||||| | ||| |||| |||| ||||| | | ||||||| ||||| Sbjct 142132542 CATTTCCCAGATTTGGGGGTATTGGATTGGGAACATGCAGAAGCGGTCTGGGTT 142132489 >seq15 Length=171247636 Score = 158 bits (174), Expect = 1e-32 Identities = 214/295 (73%), Gaps = 4/295 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||| ||||| || ||||| || |||||||||||||| | | |||| | | || Sbjct 39550006 GAGTGGATATTCTCAATCGCGATTTGAAAGCCGTAAAAGGCACGCGCCTCGGAGATCTGT 39550065 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||||| ||||| || ||||| || || |||||||| || ||||| Sbjct 39550066 ACTTCTTTCATGAAGCGGCCAGCGAGGTTTTCCAATACAATGCCGTCTGATGCAGCGAAG 39550125 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTG--GA 869810 || || || ||||| | || ||||| || |||| |||| | | || ||||||| | Sbjct 39550126 AAGGCGAGTACGTGAGTAATGAAGTGACGTTCGTTGTCGGTTAAGGAGTCCCAGTGTTGT 39550185 Query 869811 CGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 ||| | | | | | ||| || || || |||||||||| ||||| ||||||||||||| Sbjct 39550186 TGGTCT-TGTGAT-AAGTCGACTTCTTCTGCGGTCCAGAATGAGGCTTCGGCCTTTTTGT 39550243 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTT 869925 |||| ||||| | ||| |||| |||| ||||| | | || | || |||||| Sbjct 39550244 ACATTTCCCAGATTTGTGGGTATTGGATTGGGAACATGCAGAATCTGTCGGGGTT 39550298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107013805164376