Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq4 104 2e-17 seq3 104 2e-17 seq16 100 2e-16 seq12 98.7 8e-16 seq15 91.5 1e-13 seq1 89.7 4e-13 >seq4 Length=178899001 Score = 104 bits (114), Expect = 2e-17 Identities = 159/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| || || || ||||| || ||||| ||| | || ||| | Sbjct 81196087 ATGCAAATCTTTGTTAAGACCTTGACCGGTAAGACCATCACCTTGGAGGTCGAGAGCTCC 81196028 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| ||| | | || ||| ||||| ||||| || || | || ||| || Sbjct 81196027 GACACTATCGACAACGTGAAAGCAAAGATCCAGGACAAGGAGGGTATCCCACCGGACCAG 81195968 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||||||||||||| |||| || | ||| || | |||||||||||| Sbjct 81195967 CAGAGGCTCATCTTTGCGGGTAAACAGTTGGAAGACGGCAGGACTCTTGCGGATTACAAC 81195908 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGG 110498 || ||||| || || || |||| ||||||| || || |||||| Sbjct 81195907 ATCCAAAAGGAGTCGACTCTGCATCTGGTGTTGAGGCT--GAGGGG 81195864 >seq3 Length=168485022 Score = 104 bits (114), Expect = 2e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCC 110328 || ||||| || ||||||||||| ||||||| ||||| || || | ||| || | | Sbjct 118896082 AACATGCAGATCTTTGTCAAAACCCTAACCGGAAAAACAATCACTCTAGAAGTCGAAAGC 118896023 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 | ||| || ||| | | || ||| ||||| ||||||||||| | || ||| Sbjct 118896022 TC-CGACACAATCGACAACGTCAAAGCCAAGATCCAAGACAAAGAAGGAATCCCACCGGA 118895964 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 ||||||| | || || | || || |||||||| || || | |||||| | || ||||| Sbjct 118895963 TCAACAACGTCTCATCTTCGCCGGAAAACAGCTCGAAGAGGGCAGAACCCTAGCCGATTA 118895904 Query 110449 CAACATTCAAAAAGAATCTAC 110469 |||||| ||||||||||| || Sbjct 118895903 CAACATCCAAAAAGAATCCAC 118895883 >seq16 Length=188620566 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 110276 CAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGACGAT 110335 || || || |||||||| ||||||||||| |||||||| | || ||| | || Sbjct 146054991 CAGATCTTCGTCAAAACCTTAACCGGCAAGACCATTACGTTAGAGGTCGAGAGTTCTGAC 146055050 Query 110336 ACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAACAA 110395 ||| ||| | || ||| ||| || || |||||||| | || ||||||||| Sbjct 146055051 ACTATCGATAACGTCAAAGCTAAGTTTTAGGATAAAGAAGGTATTCCACCGGATCAACAG 146055110 Query 110396 AGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAACATT 110455 || ||||||| ||| || || ||| |||| |||| || || || ||| ||| || ||| Sbjct 146055111 AGGCTTATTTTTGCTGGGAAGCAGTTGGAAGATGGGAGGACTTTGCCGGTTTATAATATT 146055170 Query 110456 CAAAAAGAATCTACGTTGCACATGGTGTTAAGACT 110490 || || || ||||| ||||| | || ||| |||| Sbjct 146055171 CAGAAGGAGTCTACTTTGCATCTAGTTTTACGACT 146055205 >seq12 Length=166489593 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTG 110330 |||||| || || || ||||| ||||| |||||||| || ||| | || || | ||| Sbjct 69697979 AATGCAGATCTTCGTAAAAACCTTAACGGGCAAAACAATAACCCTAGAGGTCGAATCCTC 69697920 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | || || ||| | | ||||| || || |||||||||||| | || ||| | Sbjct 69697919 A-GACACAATCGACAACGTAAAGTCCAAAATCCAAGACAAAGAAGGCATCCCACCGGACC 69697861 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 ||||| | || || | || || |||||||||||||| | |||||| | ||||| |||| Sbjct 69697860 AACAACGCCTCATCTTCGCCGGAAAACAGCTGGAGGACGGCAGAACCCTAGCGGACTACA 69697801 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||| || || || || ||| | || |||| Sbjct 69697800 ACATCCAGAAGGAGTCAACGCTCCATTTGGT 69697770 >seq15 Length=171247636 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| ||| | ||||| || || || || | ||| || | | Sbjct 34231188 ATGCAAATCTTTGTCAAGACTCTCACCGGGAAGACGATCACATTGGAAGTTGAAAGTTCC 34231247 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | | || ||| ||||| |||||||| || | || || ||| Sbjct 34231248 GATACCATCGACAATGTTAAAGCCAAGATCCAAGACAAAGAGGGGATCCCACCAGACCAA 34231307 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | || | ||| || |||||||| ||||||| | || |||| ||||||||| Sbjct 34231308 CAGAGATTGATCTTTGCTGGAAAACAGCTTGAGGATGGTCGTACCTTGGCAGATTACAAC 34231367 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || |||||||| || | || ||||| Sbjct 34231368 ATCCAGAAAGAATCCACCCTCCATCTGGTG 34231397 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || || || |||||| | |||||||| ||||| || | ||| ||| | Sbjct 26152080 AATGCAGATTTTCGTGAAAACTCTTACCGGCAAGACCATCACTCTTGAAGTTGAGAGTTC 26152021 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | | || || |||||| |||||||||||| | || || || Sbjct 26152020 TGATACAATTGACAATGTCAAGGCCAAGATTCAGGACAAAGAAGGCATCCCACCAGACCA 26151961 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || ||||| | ||| ||||||||||| || || | | | || |||| || ||||| Sbjct 26151960 GCAGAGGCTTATCTTTGCCGGTAAACAGCTTGAAGACGGCCGTACTTTGGCAGACTACAA 26151901 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||| || || || || ||| | || | ||| | || || |||| || Sbjct 26151900 CATCCAGAAGGAGTCCACGCTCCATCTTGTGCTCAGGCTTAGAGGAGG 26151853 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/227 (69%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| || || |||||||||||||| || ||||| || | || ||| | Sbjct 34230731 AATGCAAATTTTCGTGAAAACTTTAACCGGGAAGACCATCACTCTTGAGGTCGAGAGTTC 34230790 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | | || || |||||| ||||||||||| | || || || Sbjct 34230791 TGATACAATTGACAATGTCAAGGCCAAGATTCAGGACAAAGAAGGGATCCCACCAGACCA 34230850 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || ||||| | ||| ||||||||||| || || | | | || |||| || ||||| Sbjct 34230851 GCAGAGGCTTATCTTTGCCGGTAAACAGCTTGAAGACGGCCGTACTTTGGCTGACTACAA 34230910 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGG 110498 ||| || || || || || | ||| | ||| | || || |||||| Sbjct 34230911 CATCCAGAAGGAGTCAACTCTTCACCTTGTGCTCAGGCT--GAGGGG 34230955 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/227 (69%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || || || |||||| | || ||||| ||||| || | ||| ||| | Sbjct 34348134 AATGCAGATTTTCGTGAAAACTCTTACTGGCAAGACCATCACTCTTGAAGTTGAGAGTTC 34348193 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | | ||||| |||||| ||||||||||| | || || || Sbjct 34348194 TGATACAATTGACAATGTAAAGGCTAAGATTCAGGACAAAGAAGGGATCCCACCAGACCA 34348253 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || ||||| | ||| ||||||||||| || || | | | ||| | || || ||||| Sbjct 34348254 GCAGAGGCTTATCTTTGCCGGTAAACAGCTTGAAGACGGCCGTACATTAGCTGACTACAA 34348313 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGG 110498 |||||| || || || || | ||| | ||| | || || |||||| Sbjct 34348314 CATTCAGAAGGAGTCAACTCTTCACCTTGTGCTCAGGCT--GAGGGG 34348358 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || ||||| || ||||| || || || | || |||| Sbjct 34231644 ATGCAGATTTTTGTGAAGACTTTGACTGGCAAGACTATAACGCTTGAGGTGGAGAGCTCT 34231703 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || || ||||||| ||||| |||||| | || ||| || Sbjct 34231704 GATACGATTGACAACGTGAAGGCGAAGATTCAGGACAAGGAAGGCATCCCACCGGACCAG 34231763 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||||||||| ||||| ||||||| | || | ||||| |||||| Sbjct 34231764 CAGAGGCTGATCTTTGCGGGTAAGCAGCTTGAGGATGGACGCACGCTTGCGGACTACAAC 34231823 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAAA 110502 ||||| ||||| || || | ||| | || | | || || ||||| || Sbjct 34231824 ATTCAGAAAGAGTCCACCCTCCACCTTGTCCTTCGTCTCCGTGGGGGTAA 34231873 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| ||| | || || || || || || | ||| || | | Sbjct 34348591 ATGCAAATCTTTGTCAAGACTCTCACTGGGAAGACGATCACATTGGAAGTTGAAAGTTCC 34348650 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | | || ||| ||||| |||||||| || | || || ||| Sbjct 34348651 GATACAATCGACAATGTTAAAGCCAAGATCCAAGACAAAGAGGGGATCCCACCAGACCAA 34348710 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | || | ||| || |||||||| ||||||| | || |||| ||||||||| Sbjct 34348711 CAGAGATTGATCTTTGCTGGAAAACAGCTTGAGGATGGTCGTACTTTGGCAGATTACAAC 34348770 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || |||||||| || | || ||||| Sbjct 34348771 ATCCAGAAAGAATCCACCCTCCATCTGGTG 34348800 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || ||||| || ||||| || || || | || |||| Sbjct 34349047 ATGCAGATTTTTGTGAAGACTTTGACTGGCAAGACTATAACGCTTGAGGTGGAGAGCTCT 34349106 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || || ||||||| ||||| |||||| | || ||| || Sbjct 34349107 GATACGATTGACAACGTGAAGGCGAAGATTCAGGACAAGGAAGGCATCCCACCGGACCAG 34349166 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||||||||| ||||| ||||||| | || | ||||| |||||| Sbjct 34349167 CAGAGGCTGATCTTTGCGGGTAAGCAGCTTGAGGATGGACGCACGCTTGCGGACTACAAC 34349226 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAAA 110502 ||||| ||||| || || | ||| | || | | || || ||||| || Sbjct 34349227 ATTCAGAAAGAGTCCACCCTCCACCTTGTCCTTCGTCTCCGTGGGGGTAA 34349276 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || ||||| ||| | ||||| || || || || | ||| || | | Sbjct 26151851 ATGCAAATCTTCGTCAAGACTCTCACCGGGAAGACGATCACATTGGAAGTTGAAAGTTCC 26151792 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | | || ||| ||||| |||||||| || | || || ||| Sbjct 26151791 GATACCATCGACAATGTTAAAGCCAAGATCCAAGACAAAGAGGGGATCCCACCAGACCAA 26151732 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||| ||||| ||||| ||||| | | || |||| ||||||||| Sbjct 26151731 CAGAGGCTGATCTTTGCTGGTAAGCAGCTTGAGGACGGTCGTACTTTGGCAGATTACAAC 26151672 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || |||||||| || | || ||||| Sbjct 26151671 ATCCAGAAAGAATCCACCCTTCATTTGGTG 26151642 >seq1 Length=153905722 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || || || || || ||||| || | ||| ||| Sbjct 17864802 ATGCAGATCTTTGTTAAGACGTTGACTGGAAAGACCATCACTCTTGAAGTTGAGAGCTCG 17864861 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || || |||||| || |||||||| | || || ||| Sbjct 17864862 GATACGATTGACAATGTCAAGGCAAAGATTCAAGATAAAGAAGGGATCCCACCAGACCAA 17864921 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||| |||||||||||||| |||| | || |||||||||| ||| Sbjct 17864922 CAGAGGCTGATCTTTGCCGGTAAACAGCTGGAAGATGGGCGGACTTTGGCGGATTATAAC 17864981 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || ||||||||| | || ||||| | || || |||| || Sbjct 17864982 ATTCAGAAGGAATCTACGCTTCATTTGGTGCTGAGGTTGAGAGGTGG 17865028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412833911857304