Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq14 156 7e-32 seq15 140 5e-27 >seq14 Length=174509413 Score = 156 bits (172), Expect = 7e-32 Identities = 174/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| | ||||| ||||||||||| |||||||| ||||| || ||||||||| Sbjct 142132736 GCCTCGGCGATCTGGACTTCCTTCATGAATCGGCCGGCGAGGTTTTCGAGGACGATGCCG 142132677 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || |||||||| |||||||||||||| |||| ||||| || ||| ||||| | || Sbjct 142132676 TCTGAAGCGGCGAAGAAGGCGAGGACGTGAGTGATGAAGTGGCGTTCGCCGTCGGTTAGG 142132617 Query 796270 GAGACCCAGTGGACCGT-GTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 | |||| | ||| || ||| |||||| || || || || ||||| || ||||| Sbjct 142132616 GTTTCCCA-TTGACGGTGGTCTTGTGAGAGGTCTACTTCTTCTGCTGTCCAGAATGAGGC 142132558 Query 796329 CTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 |||||| ||||||||||| ||||| || | |||| |||| ||||||| Sbjct 142132557 CTCGGCTTTTTTGTACATTTCCCAGATTTGGGGGTATTGGATTGGGAACA 142132508 Score = 122 bits (134), Expect = 1e-21 Identities = 221/324 (68%), Gaps = 6/324 (2%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 |||||| || || ||| |||||||| || || || ||||| | |||||||| Sbjct 142133061 ACCTTCATCTCGTGAGATTAATTCGTTTGAGAATGTCAGTCCCGGCATTAACCCGCGCTT 142133002 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 || ||||| || || |||||||| || || ||||| || || || |||||| |||||| Sbjct 142133001 TTTCAGCCAGAATATCGCACAGAAGCTTCCTGAGAAGAATATTCCTTCGACGCAGGCAAA 142132942 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | | || |||||| ||||| | || || || |||||| |||| |||||| Sbjct 142132941 AGCAATGATCCGCTCTGCAAACGATTCGGATCCGTC------GATCCATTTCAGCGCCCA 142132888 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 | || || ||| | |||| | || || || |||||||| || | | ||| || Sbjct 142132887 ATTGGCTTTCTTCTGGATGCAGGGGATGGTTTCAATCGCGCGAAATAGACGATTCTTTTC 142132828 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 | || |||| ||||| |||| | || ||| |||| |||||||||||||| Sbjct 142132827 AGTGGAATCTTTGATGTAGGATTCGAGTAACAGACTGTACATCTCGGAGTGGATGTTTTC 142132768 Query 794640 GATGGCGATCTGGAAGCCATAAAA 794663 |||||||| || ||||| || || Sbjct 142132767 AATGGCGATTTGAAAGCCGTAGAA 142132744 >seq15 Length=171247636 Score = 140 bits (154), Expect = 5e-27 Identities = 171/233 (73%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| | || || || |||||||||||||| || ||||| || || |||||| Sbjct 39550051 GCCTCGGAGATCTGTACTTCTTTCATGAAGCGGCCAGCGAGGTTTTCCAATACAATGCCG 39550110 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || || ||||| |||||||| ||||| | || |||||||| |||| |||| | | Sbjct 39550111 TCTGATGCAGCGAAGAAGGCGAGTACGTGAGTAATGAAGTGACGTTCGTTGTCGGTTAAG 39550170 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCG----AGGTCGACCTCCTCGGCGGTCCAAAAGGA 796325 ||| ||||||| ||| || | | |||||| || || |||||||| || || Sbjct 39550171 GAGTCCCAGTG----TTGTTGGTCTTGTGATAAGTCGACTTCTTCTGCGGTCCAGAATGA 39550226 Query 796326 GGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 ||| ||||||||||||||||| ||||| || || |||| |||| ||||||| Sbjct 39550227 GGCTTCGGCCTTTTTGTACATTTCCCAGATTTGTGGGTATTGGATTGGGAACA 39550279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916083859670792