Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq4 116 3e-21 seq15 105 5e-18 seq1 102 7e-17 seq14 96.9 3e-15 seq16 91.5 1e-13 seq12 91.5 1e-13 seq17 84.2 2e-11 >seq4 Length=178899001 Score = 116 bits (128), Expect = 3e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| ||||| || || || || || || ||||| ||| | || ||| ||| Sbjct 81196087 ATGCAAATCTTTGTTAAGACCTTGACCGGTAAGACCATCACCTTGGAGGTCGAGAGCTC- 81196029 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| ||| ||| | | || ||| |||||| || || || || | || ||| || Sbjct 81196028 CGACACTATCGACAACGTGAAAGCAAAGATCCAGGACAAGGAGGGTATCCCACCGGACCA 81195969 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||||||||||||| |||| |||| || || | ||||| ||||| Sbjct 81195968 GCAGAGGCTCATCTTTGCGGGTAAACAGTTGGAAGACGGCAGGACTCTTGCGGATTACAA 81195909 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAG 107770 ||| ||||||||||| || |||| |||||||||| Sbjct 81195908 CATCCAAAAGGAGTCGACTCTGCATCTGGTGTTGAG 81195873 >seq15 Length=171247636 Score = 105 bits (116), Expect = 5e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| ||||| || |||||| | || ||||| ||||| || | ||| ||| | Sbjct 34348134 AATGCAGATTTTCGTGAAAACTCTTACTGGCAAGACCATCACTCTTGAAGTTGAGAGTTC 34348193 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | ||||| |||||| || |||||||| | || || || Sbjct 34348194 TGATACAATTGACAATGTAAAGGCTAAGATTCAGGACAAAGAAGGGATCCCACCAGACCA 34348253 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | ||| ||||||||||| || |||| | ||| | || |||||||| Sbjct 34348254 GCAGAGGCTTATCTTTGCCGGTAAACAGCTTGAAGACGGCCGTACATTAGCTGACTACAA 34348313 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||| |||||||| || | ||| | ||| Sbjct 34348314 CATTCAGAAGGAGTCAACTCTTCACCTTGTG 34348344 Score = 102 bits (112), Expect = 7e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| ||||| || |||||| | || ||||| ||||| || | ||| ||| | Sbjct 26152080 AATGCAGATTTTCGTGAAAACTCTTACCGGCAAGACCATCACTCTTGAAGTTGAGAGTTC 26152021 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | || || |||||| || ||||||||| | || || || Sbjct 26152020 TGATACAATTGACAATGTCAAGGCCAAGATTCAGGACAAAGAAGGCATCCCACCAGACCA 26151961 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | ||| ||||||||||| || |||| | || |||| |||||||| Sbjct 26151960 GCAGAGGCTTATCTTTGCCGGTAAACAGCTTGAAGACGGCCGTACTTTGGCAGACTACAA 26151901 Query 107735 CATTCAAAAGGAGTCTACG 107753 ||| || |||||||| ||| Sbjct 26151900 CATCCAGAAGGAGTCCACG 26151882 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||||||||| || ||||||||||| || || ||||| || | || ||| | Sbjct 34230731 AATGCAAATTTTCGTGAAAACTTTAACCGGGAAGACCATCACTCTTGAGGTCGAGAGTTC 34230790 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | || || |||||| || |||||||| | || || || Sbjct 34230791 TGATACAATTGACAATGTCAAGGCCAAGATTCAGGACAAAGAAGGGATCCCACCAGACCA 34230850 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | ||| ||||||||||| || |||| | || |||| |||||||| Sbjct 34230851 GCAGAGGCTTATCTTTGCCGGTAAACAGCTTGAAGACGGCCGTACTTTGGCTGACTACAA 34230910 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || |||||||| || | ||| | ||| Sbjct 34230911 CATCCAGAAGGAGTCAACTCTTCACCTTGTG 34230941 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||| || ||||| || ||||| || || || | || |||| ||| Sbjct 34231644 ATGCAGATTTTTGTGAAGACTTTGACTGGCAAGACTATAACGCTTGAGGTGGAGAGCTCT 34231703 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | || || |||||| || || |||||| | || ||| || Sbjct 34231704 -GATACGATTGACAACGTGAAGGCGAAGATTCAGGACAAGGAAGGCATCCCACCGGACCA 34231762 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||||||||| ||||| ||||| | || | ||||||||||| Sbjct 34231763 GCAGAGGCTGATCTTTGCGGGTAAGCAGCTTGAGGATGGACGCACGCTTGCGGACTACAA 34231822 Query 107735 CATTCAAAAGGAGTCTAC 107752 |||||| || ||||| || Sbjct 34231823 CATTCAGAAAGAGTCCAC 34231840 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||| || ||||| || ||||| || || || | || |||| ||| Sbjct 34349047 ATGCAGATTTTTGTGAAGACTTTGACTGGCAAGACTATAACGCTTGAGGTGGAGAGCTCT 34349106 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | || || |||||| || || |||||| | || ||| || Sbjct 34349107 -GATACGATTGACAACGTGAAGGCGAAGATTCAGGACAAGGAAGGCATCCCACCGGACCA 34349165 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||||||||| ||||| ||||| | || | ||||||||||| Sbjct 34349166 GCAGAGGCTGATCTTTGCGGGTAAGCAGCTTGAGGATGGACGCACGCTTGCGGACTACAA 34349225 Query 107735 CATTCAAAAGGAGTCTAC 107752 |||||| || ||||| || Sbjct 34349226 CATTCAGAAAGAGTCCAC 34349243 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||| ||||| ||| | || || || ||||| || | ||| || ||| Sbjct 26151395 ATGCAGATTTTCGTCAAGACTCTCACTGGGAAGACCATCACTTTGGAAGTTGAAAGCTC- 26151337 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | | || || ||||||| ||||||||||| | || || || Sbjct 26151336 CGACACCATTGACAATGTGAAGGCAAAGATTCAAGATAAAGAAGGGATCCCGCCAGACCA 26151277 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | ||| || || || || || |||| | ||| | || |||||||| Sbjct 26151276 GCAGAGGCTTATCTTTGCAGGGAAGCAACTTGAAGACGGCCGAACCTTAGCCGACTACAA 26151217 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||| |||||||| || | || ||||| Sbjct 26151216 CATTCAGAAGGAGTCCACTCTTCATTTGGTG 26151186 >seq1 Length=153905722 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| || || || || || || ||||| || | ||| ||| ||| | Sbjct 17864802 ATGCAGATCTTTGTTAAGACGTTGACTGGAAAGACCATCACTCTTGAAGTTGAGAGCTCG 17864861 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | || || ||||||| ||||||||||| | || || || Sbjct 17864862 -GATACGATTGACAATGTCAAGGCAAAGATTCAAGATAAAGAAGGGATCCCACCAGACCA 17864920 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||| || || | ||| |||||||||||||| || | || ||||||| || || Sbjct 17864921 ACAGAGGCTGATCTTTGCCGGTAAACAGCTGGAAGATGGGCGGACTTTGGCGGATTATAA 17864980 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||| ||||| |||||| | || ||||| |||| ||| |||| || Sbjct 17864981 CATTCAGAAGGAATCTACGCTTCATTTGGTGCTGAGGTTGAGAGGTGG 17865028 >seq14 Length=174509413 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGG---CT 107612 ||||| || || |||||||| ||||| | ||| |||||||| | || ||| || Sbjct 117470628 ATGCAGATCTTCGTCAAAACCTTAACCGACAAGACCATTACGTTAGAGGTCGAGAGTTCT 117470569 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||| || ||| | || ||| |||||| ||||||||||| | || |||| Sbjct 117470568 GGC---ACCATCGATAACGTCAAAGCTAAGATTAAGGATAAAGAAGGTATTCCACCGGAT 117470512 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 ||||| || ||||||| ||| || || ||| |||| || | | || ||||||| || Sbjct 117470511 CAGCAAAGGCTTATTTTTGCTGGGAAGCAGTTGGAAGATGGGAGGACTTTGGCGGATTAT 117470452 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTT 107767 || ||||| ||||||| ||| ||||| |||| || Sbjct 117470451 AATATTCAGAAGGAGTTTACTTTGCATCTGGTTTT 117470417 >seq16 Length=188620566 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 107559 CAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGCGAT 107618 || || || |||||||| ||||| ||||| |||||||| | || ||| | || Sbjct 146054991 CAGATCTTCGTCAAAACCTTAACCGGCAAGACCATTACGTTAGAGGTCGAGAGTTCTGAC 146055050 Query 107619 ACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAGCAG 107678 ||| ||| | || ||| ||| || ||||||||||| | || |||||| ||| Sbjct 146055051 ACTATCGATAACGTCAAAGCTAAGTTTTAGGATAAAGAAGGTATTCCACCGGATCAACAG 146055110 Query 107679 AGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAACATT 107738 || ||||||| ||| || || ||| |||| || | | || || ||| || || ||| Sbjct 146055111 AGGCTTATTTTTGCTGGGAAGCAGTTGGAAGATGGGAGGACTTTGCCGGTTTATAATATT 146055170 Query 107739 CAAAAGGAGTCTACGTTGCA 107758 || ||||||||||| ||||| Sbjct 146055171 CAGAAGGAGTCTACTTTGCA 146055190 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAA-CGGAGGCTGG 107614 ||||| || || |||||||| |||| ||||| || || || | ||| || | ||| Sbjct 106906213 ATGCAGATCTTCGTCAAAACCCTAACCGGCAAGACAATCACTCTGGAAGTCGAAAGCTC- 106906271 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | | || || ||||| || || || ||| | || ||| || Sbjct 106906272 CGACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCACCGGACCA 106906331 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | || || |||||||| || |||| || | ||||||||||| Sbjct 106906332 GCAGAGGCTCATCTTCGCTGGGAAACAGCTCGAAGACGGTCGCACTCTTGCGGACTACAA 106906391 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||| || |||||||| || |||| |||||||||| || |||| || Sbjct 106906392 CATCCAGAAGGAGTCGACTCTGCATCTGGTGTTGAGGTTAAGAGGTGG 106906439 >seq12 Length=166489593 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || || || ||||| ||||| |||||||| || ||| | || || | Sbjct 69697979 AATGCAGATCTTCGTAAAAACCTTAACGGGCAAAACAATAACCCTAGAGGTCGAATCCTC 69697920 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | ||||| || || || ||||||||| | || ||| || Sbjct 69697919 AGACACAATCGACAACGTAAAGTCCAAAATCCAAGACAAAGAAGGCATCCCACCGGACCA 69697860 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 || | || || | || || |||||||||||||||| || ||| | ||||||||||| Sbjct 69697859 ACAACGCCTCATCTTCGCCGGAAAACAGCTGGAGGACGGCAGAACCCTAGCGGACTACAA 69697800 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| || |||||||| ||| | || |||| Sbjct 69697799 CATCCAGAAGGAGTCAACGCTCCATTTGGT 69697770 >seq17 Length=214723238 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 || ||||||||| | || ||| |||||| | || || | || || |||||||| || Sbjct 210026355 GACAAAGAAGGCATCCCACCGGACCAGCAGCGGCTCATCTTCGCCGGAAAACAGCTCGAA 210026296 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTT 107767 |||| || ||| | |||||||||||||| || |||||||| ||| | || ||||||| Sbjct 210026295 GACGGCAGAACCCTAGCGGACTACAACATCCAGAAGGAGTCAACGCTCCATTTGGTGTT 210026237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398869371916792