Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq3 93.3 7e-14 seq12 91.5 2e-13 seq14 86.0 1e-11 >seq3 Length=168485022 Score = 93.3 bits (102), Expect = 7e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| |||| ||||||||||| ||| | || || ||| || Sbjct 118896078 TGCAGATCTTTGTCAAAACCCTAACCGGAAAAACAATCACTCTAGAAGTCGAAAGCTCCG 118896019 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | || || ||| || || ||| |||||||| || ||||| ||||||| Sbjct 118896018 ACACAATCGACAACGTCAAAGCCAAGATCCAAGACAAAGAAGGAATCCCACCGGATCAAC 118895959 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | ||||| || || || ||||| | || || ||||| || | ||||| || | Sbjct 118895958 AACGTCTCATCTTCGCCGGAAAACAGCTCGAAGAGGGCAGAACCCTAGCCGATTACAACA 118895899 Query 146212 TACAAAAAGAATCGAC 146227 | ||||||||||| || Sbjct 118895898 TCCAAAAAGAATCCAC 118895883 >seq12 Length=166489593 Score = 91.5 bits (100), Expect = 2e-13 Identities = 147/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| || ||| ||||||| ||||| || |||||||| || | || || ||| | | | Sbjct 69697977 TGCAGATCTTCGTAAAAACCTTAACGGGCAAAACAATAACCCTAGAGGTCGAATCCTCA- 69697919 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || || | || ||||| ||||| ||| ||||||||||| ||||| || ||| Sbjct 69697918 GACACAATCGACAACGTAAAGTCCAAAATCCAAGACAAAGAAGGCATCCCACCGGACCAA 69697859 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||| | ||||| || || || ||||| | || || ||||| || | || || || Sbjct 69697858 CAACGCCTCATCTTCGCCGGAAAACAGCTGGAGGACGGCAGAACCCTAGCGGACTACAAC 69697799 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGT 146239 || || || || || || ||||||| || Sbjct 69697798 ATCCAGAAGGAGTCAACGCTCCATTTGGT 69697770 >seq14 Length=174509413 Score = 86.0 bits (94), Expect = 1e-11 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| ||||| | || || ||||| | || || || | | Sbjct 117470627 TGCAGATCTTCGTCAAAACCTTAACCGACAAGACCATTACGTTAGAGGTCGAGAGTTCTG 117470568 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 || || | || || ||| ||| || | ||||||||| |||||||| ||||| | Sbjct 117470567 GCACCATCGATAACGTCAAAGCTAAGATTAAGGATAAAGAAGGTATTCCACCGGATCAGC 117470508 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| || |||||||| || || || || || ||| || || || | |||||||||| Sbjct 117470507 AAAGGCTTATTTTTGCTGGGAAGCAGTTGGAAGATGGGAGGACTTTGGCGGATTATAATA 117470448 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGA 146246 | || || || | ||| | ||| | || |||||| Sbjct 117470447 TTCAGAAGGAGTTTACTTTGCATCTGGTTTTACGA 117470413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786151384221760