Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 1e-15 seq1 93.3 4e-14 seq4 91.5 1e-13 seq12 89.7 5e-13 >seq3 Length=168485022 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | ||| | |||| || ||||||||||| |||||||||||| Sbjct 118895853 CCGCCGCGGAGACGAAGAACGAGGTGAAGGGTGGATTCTTTTTGGATGTTGTAATCGGCT 118895912 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || |||||||| ||||| || || |||| |||||||| ||||| || || Sbjct 118895913 AGGGTTCTGCCCTCTTCGAGCTGTTTTCCGGCGAAGATGAGACGTTGTTGATCCGGTGGG 118895972 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| || || ||| | | || | ||||| | | ||| ||| Sbjct 118895973 ATTCCTTCTTTGTCTTGGATCTTGGCTTTGACGTTGTCGATTGTGTCGGAGCTTTCGACT 118896032 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | || || ||||| | ||||| || || || ||||| Sbjct 118896033 TCTAGAGTGATTGTTTTTCCGGTTAGGGTTTTGACAAAGATCTGCAT 118896079 >seq1 Length=153905722 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | ||| | || | ||||| || || || || || ||||||||||| | Sbjct 17864572 CCTCCACGGAGACGGAGGACCAGATGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGCC 17864513 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||||||||||| || || || ||||||| | ||||| || || || Sbjct 17864512 AAGGTTCTGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGTGGA 17864453 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| ||||| ||| | | || | | |||| | |||||| Sbjct 17864452 ATACCTTCTTTGTCTTGGATTTTAGCTTTGACATTGTCGATCATGTCAGAACTCTCTACT 17864393 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 |||| ||| | ||||| ||||| | ||||| || || || |||||| || Sbjct 17864392 TCAAGAGTGATTGTCTTTCCGGTGAGCGTTTTAACAAAGATCTGCATACCT 17864342 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || ||||| | |||||| || || || |||||||| ||| Sbjct 17864800 CCACCACGGAGACGGAGGACCAAATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGGCT 17864741 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || |||||| || || || || ||| |||||| | ||||| || || || Sbjct 17864740 AGGGTTCTGCCGTCTTCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGG 17864681 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 ||||| || || || || ||| ||| | | || | ||||| | ||| || Sbjct 17864680 ATGCCCTCCTTATCCTGGATCTTTGCTTTGACATTGTCAATGGTGTCGGAACTTTCAACC 17864621 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 || | ||| | |||||||||||||||||| || || || || |||||| || Sbjct 17864620 TCCAAAGTGATCGTCTTGCCGGTCAATGTCTTCACAAAGATCTGCATACCT 17864570 >seq4 Length=178899001 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || ||||| |||||||||||| || |||| |||||| | ||| ||||| Sbjct 81196119 GTTGACTCCTTTTGGATGTTGTAATCGGCCAAGGTGCGGCCGTCTTCCAATTGCTTACCG 81196178 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || |||||||||| ||||| || || || || || || ||||| ||| ||| ||| Sbjct 81196179 GCGAAGATCAGACGCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGAATCTTTGCTTTG 81196238 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | || || | | ||| || |||| || | ||||| || ||||| || Sbjct 81196239 ACGTTATCGATGGTATCGGAGCTTTCGACCTCAAGGGTGATGGTCTTACCAGTCAAAGTC 81196298 Query 137395 TTTACGAATATTTGCATA 137412 || || || ||||||||| Sbjct 81196299 TTCACAAAGATTTGCATA 81196316 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | ||| ||||||| || || || ||||| |||||||||||| Sbjct 81196317 CCACCACGAAGACGGAGAACCAAATGAAGAGTTGACTCCTTTTGAATGTTGTAATCGGCA 81196376 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||| || | || |||||||| |||||| | || || || || || Sbjct 81196377 AGAGTCCTGCCGTCCTCCAACTGCTTACCAGCGAAGATCAATCTCTGTTGGTCTGGTGGG 81196436 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || || ||||| || || || | | || | ||||| | | ||| || Sbjct 81196437 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTATCGATGGTGTCGGAGCTTTCGACC 81196496 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||| || | |||||||||||| | ||||| ||||| ||||||||| Sbjct 81196497 TCAAGGGTAATCGTCTTGCCGGTTAGGGTTTTGACGAAGATTTGCATA 81196544 >seq12 Length=166489593 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 137197 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAAT-CGCTCATTGTGCTCGA 137255 ||||| || | ||| | || || || || || |||||||||| |||| | || || Sbjct 157664027 CGCAACACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAATCCGCT-AGGGTTCTGCC 157664085 Query 137256 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 137315 ||||||||| ||||| || || | || || |||||||| || || || |||||||| || Sbjct 157664086 GTCTTCGAGCTGTTTTCCGGCGAAAATTAGCCGTTGCTGGTCCGGTGGAATGCCTTCCTT 157664145 Query 137316 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCAC 137375 ||| || ||| || | | || | |||||| | || ||| || || | || | Sbjct 157664146 GTCCTGGATCTTTGCCTTCACGTTGTCGATCGTGTCGGAGGATTCGACCTCCAACGTGAT 157664205 Query 137376 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||||| || || | ||||| ||||| || ||||| Sbjct 157664206 CGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 157664241 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGTCTTC 137261 || ||||| | || || || || || |||||||| || ||| | || || ||| || Sbjct 69697770 ACCAAATGGAGCGTTGACTCCTTCTGGATGTTGTAGTCCGCT-AGGGTTCTGCCGTCCTC 69697828 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321 || ||||| || || |||| || ||||| || || || || |||||||||||||| Sbjct 69697829 CAGCTGTTTTCCGGCGAAGATGAGGCGTTGTTGGTCCGGTGGGATGCCTTCTTTGTCTTG 69697888 Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 ||||| |||| | || | ||||||| || ||| || || | || | || || Sbjct 69697889 GATTTTGGACTTTACGTTGTCGATTGTGTCTGAGGATTCGACCTCTAGGGTTATTGTTTT 69697948 Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||| || || ||||||||||| || ||||| Sbjct 69697949 GCCCGTTAAGGTTTTTACGAAGATCTGCAT 69697978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488534668809600