Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq15 102 2e-16 seq4 87.8 4e-12 seq5 84.2 5e-11 >seq15 Length=171247636 Score = 102 bits (112), Expect = 2e-16 Identities = 214/314 (68%), Gaps = 10/314 (3%) Strand=Plus/Minus Query 131867 GCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGT-GCTTTCTGTGCTATCTTTTGGCT 131925 || ||||| ||||||||||| ||||||||||| ||| ||||| |||||||| || ||| | Sbjct 39549848 GCCTTTGCCTGTGTTGAAGGAATATTCTTTTCTGGTAGCTTT-TGTGCTATTTTCTGGTT 39549790 Query 131926 TAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGA 131985 ||||||||||| |||||||| || | | || || || | || || ||| |||| || Sbjct 39549789 GAAGAAGCGTGGGTTGATGCCGGGTTTAACGTTCTCGAACGAGTTGATATCGCGAGACGA 39549730 Query 131986 AGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTG---ATAAACTTGA 132042 | |||||| || || ||| || | ||| || ||| || | ||| |||| Sbjct 39549729 GGGTTTGCATTGCGATTTCGCTTGCTTGCTGTAT----AAGTTGTTGAATACAAAGTTGA 39549674 Query 132043 -TGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATTA 132101 ||| | | ||| || | || || || || || |||| ||||||| || Sbjct 39549673 GTGAGGAGCGGGTGAAAGGGATTGTGGCGGATGCGGTGGAGATTGAGAGGGAGTTTGTTT 39549614 Query 132102 CAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCTATGAAGGAGTACATTG 132161 || || || || || ||| |||||||||||| || | |||| |||| |||| Sbjct 39549613 GTGATGCCTTACCCTGTGGGTTGGTTGGGATGAATGGTGGGTTGATGAGTCAGTATATTG 39549554 Query 132162 AATTCGTTGCTGAT 132175 | || ||||| ||| Sbjct 39549553 AGTTTGTTGCGGAT 39549540 >seq4 Length=178899001 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 305307 GACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGT 305366 |||| |||||||| |||| ||||| || ||| | ||||| ||||||| |||| Sbjct 72094777 GACACTTGAATGATGGAGATTTTGTTCTTTTTAATCGACAACCGAGTTTGCATAAGATGT 72094718 Query 305367 CTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTA--AG 305424 |||| |||| |||| |||| | | || | || || || || ||| || || Sbjct 72094717 CTATAATGGGGCATAGGATCAAGATCATGCCTTATTCCACCTTCCGGTTGAATTTATCAG 72094658 Query 305425 TGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 | | || | || |||||||| ||||| ||||||||||||||||| ||||| |||||||| Sbjct 72094657 T-CACGT-CACCATATAATGCTGATTTCGATGGAGATGAAATGAACATGCACGTACCTCA 72094600 Query 305485 ATCA 305488 ||| Sbjct 72094599 GTCA 72094596 >seq5 Length=219053782 Score = 84.2 bits (92), Expect = 5e-11 Identities = 77/95 (81%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 167248 CACCAGCATTATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAACTAATTTA 167306 ||||||| |||||||| || | |||| ||||||||||||||||||||||| || | || Sbjct 126888709 CACCAGCGTTATCGAACTC-TCCGCAATAATTTGGTGCTGAAAATACAGTTACCAGTTGT 126888767 Query 167307 CGATTGAAAAATAATTCATAACCATCTTCAACAAC 167341 || || ||| |||||||| ||||| || ||||| Sbjct 126888768 CGGTTTGCAAAGAATTCATACCCATCCTCTACAAC 126888802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186789565172408