Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq15 105 6e-18 seq8 93.3 4e-14 seq17 89.7 5e-13 seq1 89.7 5e-13 >seq15 Length=171247636 Score = 105 bits (116), Expect = 6e-18 Identities = 143/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTTCGAGCTGTTTACCG 131986 ||||||| || |||||||||||||| ||| ||| |||| ||||| |||||||||||| Sbjct 34348330 TTGACTCCTTCTGAATGTTGTAGTCAGCTAATG-TACGGCCGTCTTCAAGCTGTTTACCG 34348272 Query 131987 GAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTC 132046 | | |||| || | ||| || ||||| || || |||||||| || ||| || || Sbjct 34348271 GCAAAGATAAGCCTCTGCTGGTCTGGTGGGATCCCTTCTTTGTCCTGAATCTTAGCCTTT 34348212 Query 132047 AACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTT 132106 | | || | ||||| | ||| ||||| | || | || || ||||| |||||| Sbjct 34348211 ACATTGTCAATTGTATCAGAACTCTCAACTTCAAGAGTGATGGTCTTGCCAGTAAGAGTT 34348152 Query 132107 TTTATGAAAATCTGCAT 132123 || | |||||||||||| Sbjct 34348151 TTCACGAAAATCTGCAT 34348135 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| || ||||| ||||| ||||||||||||| | Sbjct 26151886 GACTCCTTCTGGATGTTGTAGTCTGCCAAAGTACGGCCGTCTTCAAGCTGTTTACCGGCA 26151945 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || ||||| || ||||||||||| || ||| || || | Sbjct 26151946 AAGATAAGCCTCTGCTGGTCTGGTGGGATGCCTTCTTTGTCCTGAATCTTGGCCTTGACA 26152005 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||| | ||| ||||| | || | || || || || |||||||| Sbjct 26152006 TTGTCAATTGTATCAGAACTCTCAACTTCAAGAGTGATGGTCTTGCCGGTAAGAGTTTTC 26152065 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 26152066 ACGAAAATCTGCAT 26152079 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | ||||| || ||||||||||||||| | ||| || ||||| Sbjct 26151187 ACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCTAAGGTTCGGCCGTCTTCA 26151246 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 || || || || | | |||| || | ||| || ||||| || || ||||||||||| | Sbjct 26151247 AGTTGCTTCCCTGCAAAGATAAGCCTCTGCTGGTCTGGCGGGATCCCTTCTTTATCTTGA 26151306 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || ||| |||| | || | || |||| || ||||| | || | || || Sbjct 26151307 ATCTTTGCCTTCACATTGTCAATGGTGTCGGAGCTTTCAACTTCCAAAGTGATGGTCTTC 26151366 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||| || | |||||||||||| Sbjct 26151367 CCAGTGAGAGTCTTGACGAAAATCTGCAT 26151395 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATG-GTACGCGAATCTTCGAGCTGTTTACCGGA 131988 |||||||| |||||||||||||| | || | || || ||| || ||||| ||||| | Sbjct 34231837 GACTCTTTCTGAATGTTGTAGTC-CGCAAGCGTGCGTCCATCCTCAAGCTGCTTACCCGC 34231779 Query 131989 ATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAA 132048 | |||| || | ||| || || || || |||||||| || || ||| || |||| Sbjct 34231778 AAAGATCAGCCTCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGAATCTTCGCCTTCAC 34231719 Query 132049 CTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 132108 | || | ||||| | |||||| || | ||| | || || ||||||| ||| || Sbjct 34231718 GTTGTCAATCGTATCAGAGCTCTCCACCTCAAGCGTTATAGTCTTGCCAGTCAAAGTCTT 34231659 Query 132109 TATGAAAATCTGCAT 132123 | ||||||||||| Sbjct 34231658 CACAAAAATCTGCAT 34231644 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || ||||||||||||||| | ||||| |||||| ||||||||||||| | Sbjct 34348556 GACTCCTTCTGAATGTTGTAGTCGGCTAAAGTACGGCCATCTTCAAGCTGTTTACCGGCA 34348497 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 |||| | ||||| || || || || ||||| |||||||| Sbjct 34348496 AAGATCAATCGCTGCTGGTCAGGTGGGATGCCCTCTTTATC 34348456 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATG-GTACGCGAATCTTCGAGCTGTTTACCGGA 131988 |||||||| |||||||||||||| | || | || || ||| || ||||| ||||| | Sbjct 34349240 GACTCTTTCTGAATGTTGTAGTC-CGCAAGCGTGCGTCCATCCTCAAGCTGCTTACCCGC 34349182 Query 131989 ATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAA 132048 | |||| || | ||| || || || || |||||||| || || ||| || |||| Sbjct 34349181 AAAGATCAGCCTCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGAATCTTCGCCTTCAC 34349122 Query 132049 CTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 132108 | || | ||||| | |||||| || | ||| | || || ||||||| ||| || Sbjct 34349121 GTTGTCAATCGTATCAGAGCTCTCCACCTCAAGCGTTATAGTCTTGCCAGTCAAAGTCTT 34349062 Query 132109 TATGAAAATCTGCAT 132123 | ||||||||||| Sbjct 34349061 CACAAAAATCTGCAT 34349047 >seq8 Length=153252196 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || |||||||||||| | ||| | ||||| |||||||| |||| Sbjct 2509497 GACTCTTTCTGGATGTTGTAGTCGGCTAGGGTTCTGCCGTCTTCAAGCTGTTTTCCGGCG 2509438 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| ||||||||||| || || || |||||||| || || ||| || |||| Sbjct 2509437 AAGATGAGACGCTGTTGGTCCGGTGGGATGCCTTCCTTGTCTTGAATCTTGGCCTTCACG 2509378 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| | ||||| || | || | ||| ||||| || || ||||| Sbjct 2509377 TTGTCGATCGTGTCGGAGGATTCCACCTCCAATGTGATCGTCTTACCCGTTAGGGTTTTC 2509318 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 2509317 ACGAAGATCTGCAT 2509304 >seq17 Length=214723238 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGA 131967 || || |||||||| | ||||||| || || ||||||||||| ||| | ||| | Sbjct 210026234 CGTAACACCAAATGGAGCGTTGACTCCTTCTGGATGTTGTAGTCCGCT-AGGGTTCTGCC 210026292 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 |||||||||||||| |||| |||| || ||||| || || || || ||||||||||| Sbjct 210026293 GTCTTCGAGCTGTTTTCCGGCGAAGATGAGCCGCTGCTGGTCCGGTGGGATGCCTTCTTT 210026352 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 || || || |||| | || | || |||| | || || || | ||| | Sbjct 210026353 GTCTTGGATCTTGGCCTTCACGTTGTCGATTGTGTCGGAGGATTCGACCTCCAACGTTAT 210026412 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| || || || || ||||| | ||| |||||||| Sbjct 210026413 CGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 210026448 >seq1 Length=153905722 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | || || || |||||||| || || || || ||| |||||| Sbjct 17865010 ACCAAATGAAGCGTAGATTCCTTCTGAATGTTATAATCCGCCAAAGTCCGCCCATCTTCC 17864951 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||||||||||| | |||| || | |||||| ||||| || || ||||||||||| | Sbjct 17864950 AGCTGTTTACCGGCAAAGATCAGCCTCTGTTGGTCTGGTGGGATCCCTTCTTTATCTTGA 17864891 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || ||| || | | || | ||||| | ||| ||||| | || | || || Sbjct 17864890 ATCTTTGCCTTGACATTGTCAATCGTATCCGAGCTCTCAACTTCAAGAGTGATGGTCTTT 17864831 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||| || || | || |||||||| Sbjct 17864830 CCAGTCAACGTCTTAACAAAGATCTGCAT 17864802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476602096726080