Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq3 123 2e-23 seq15 82.4 7e-11 >seq3 Length=168485022 Score = 123 bits (136), Expect = 2e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 |||||||| | ||||| ||||| ||||||||||| | ||||| | ||||||||| | Sbjct 118896082 AACATGCAGATCTTTGTCAAAACCCTAACCGGAAAAACAATCACTCTAGAAGTCGAAAGC 118896023 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 ||| || ||||| | || ||| || || || ||||| || || || || ||| Sbjct 118896022 TCCGACACAATCGACAACGTCAAAGCCAAGATCCAAGACAAAGAAGGAATCCCACCGGAT 118895963 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTAC 25351 || ||| | ||||| | || ||| ||||| |||||||| | |||| | ||||||| Sbjct 118895962 CAACAACGTCTCATCTTCGCCGGAAAACAGCTCGAAGAGGGCAGAACCCTAGCCGATTAC 118895903 Query 25352 AATATTCAAAAAGAATCCACCATTCA 25377 || || ||||||||||||||| |||| Sbjct 118895902 AACATCCAAAAAGAATCCACCCTTCA 118895877 >seq15 Length=171247636 Score = 82.4 bits (90), Expect = 7e-11 Identities = 161/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 25166 TTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTC 25225 |||| | | |||||| | ||||| ||||| ||||||||||| | ||||| | || || Sbjct 26152316 TTAATCCAGATGCAAATTTTTGTGAAAACTTTAACCGGAAAGACCATCACCCTTGAGGTA 26152257 Query 25226 GAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCG 25285 || |||||| ||||| | || || || || || || ||||| || || Sbjct 26152256 GAGAGTTCCGATACAATCGACAACGTTAAGGCCAAGATCCAAGACAAGGAGGGGATCCCT 26152197 Query 25286 CCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC 25345 || || ||||||||| | || | || ||| || || || ||||| | | | | | Sbjct 26152196 CCAGACCAGCAAAGATTGATCTTCGCCGGAAAGCAGCTTGAAGACGGCCGTACCTTAGCC 26152137 Query 25346 GATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || ||||| || ||||| || || ||| ||||| | ||| | || | ||||| |||| Sbjct 26152136 GACTACAACATCCAAAAGGAGTCAACCCTTCATCTCGTGCTCAGGCTCAGAGGTGGAA 26152079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445085898696960