Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq14 259 7e-63 seq15 188 1e-41 >seq14 Length=174509413 Score = 259 bits (286), Expect = 7e-63 Identities = 392/546 (72%), Gaps = 14/546 (3%) Strand=Plus/Plus Query 1455734 AACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAA 1455793 ||||| ||||||| | ||||||| |||| |||| | || |||||||||||| || Sbjct 142132489 AACCCAGACCGCTTCTGCATGTTCCCAATCCAATACCCCCAAATCTGGGAAATGTACAAA 142132548 Query 1455794 AAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGAC-ACGGTCC 1455852 |||| |||||||||| || ||||| || || || || |||||| ||| || ||| Sbjct 142132549 AAAG-CCGAGGCCTCATTCTGGACAGCAGAAGAAGTAGACCTCTCACAAGACCACCGTCA 142132607 Query 1455853 ACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTC 1455912 | |||| | || | ||||| ||| ||||| ||||||| |||||||||||||| || | Sbjct 142132608 A-TGGGAAACCCTAACCGACGGCGAACGCCACTTCATCACTCACGTCCTCGCCTTCTT-C 142132665 Query 1455913 GCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCA- 1455971 ||||| || |||||||| ||| ||||| |||||||| || ||||| || ||||| Sbjct 142132666 GCCGCTTCAGACGGCATCGTCCTCGAAAACCTCGCCGGCCGATTCATGAAGGAAGTCCAG 142132725 Query 1455972 ATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGA 1456031 || ||| ||||| ||| ||| ||||| || || |||||||| |||||||||||||| || Sbjct 142132726 ATCGCC-GAGGCGCGTGCGTTCTACGGCTTTCAAATCGCCATTGAAAACATCCACTCCGA 142132784 Query 1456032 AACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTT 1456091 | ||| || | |||| ||||| |||| || | || ||| | | || || Sbjct 142132785 GATGTACAGTCTGTTACTCGAATCCTACATCAAAGATTCCACTGAAAAGAATCGTCTATT 142132844 Query 1456092 TCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGAT 1456151 |||||| || || || | || | | ||| || ||| | |||||| |||| ||||| Sbjct 142132845 TCGCGCGATTGAAACCATCCCCTGCATCCAGAAGAAAGCCAATTGGGCGCTGAAATGGAT 142132904 Query 1456152 CAACAAGGA-GGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGG 1456209 | || ||| | ||| ||||| |||||| || | | |||||| ||||||| || Sbjct 142132905 CGAC--GGATCCGAATCG----TTTGCAGAGCGGATCATTGCTTTTGCCTGCGTCGAAGG 142132958 Query 1456210 CATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCC 1456269 || || ||||| || || ||||| || || || ||||| || |||||||| | ||||| Sbjct 142132959 AATATTCTTCTCAGGAAGCTTCTGTGCGATATTCTGGCTGAAAAAGCGCGGGTTAATGCC 142133018 Query 1456270 CGGTCT 1456275 || || Sbjct 142133019 GGGACT 142133024 >seq15 Length=171247636 Score = 188 bits (208), Expect = 1e-41 Identities = 360/526 (68%), Gaps = 16/526 (3%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| |||| |||| | || |||||||||||| ||||||||||| ||||| || Sbjct 39550279 TGTTCCCAATCCAATACCCACAAATCTGGGAAATGTAC-AAAAAGGCCGAAGCCTCATTC 39550221 Query 1455813 TGGACCGCCGAGGAGGTCGACCT----CGGCGCCGACACGGTCCACTGGGTGTCGCTGAG 1455868 |||||||| || || |||||| | | || ||| ||||||| || | | Sbjct 39550220 TGGACCGCAGAAGAAGTCGACTTATCACAAGACCAACAA----CACTGGGACTCCTTAAC 39550165 Query 1455869 CGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCA 1455928 |||| |||| || || ||||| | ||||| |||||||| || ||| || || |||| Sbjct 39550164 CGACAACGAACGTCACTTCATTACTCACGTACTCGCCTTCTT-CGCTGCATCAGACGGCA 39550106 Query 1455929 TCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTT 1455988 | || || ||||| || |||||||| |||||||| || || | | ||||| ||| Sbjct 39550105 TTGTATTGGAAAACCTCGCTGGCCGCTTCATGAAAGAAGTACAGATCTCCGAGGCGCGTG 39550046 Query 1455989 TGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGA 1456048 |||||||| || || ||||| || || || ||||||||||||| ||| | ||| Sbjct 39550045 CCTTTTACGGCTTTCAAATCGCGATTGAGAATATCCACTCTGAAATGTACAGTTTGCTGT 39549986 Query 1456049 TCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGG 1456108 | || | ||| |||| || | || || || ||| | || || || || || || Sbjct 39549985 TGGAATCGTACATCAAAGATTCTGTTGAAAAAAACCGTTTGTTCCGTGCTATTGAGACAA 39549926 Query 1456109 TGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCG 1456168 | || | || ||||||||| | |||||||||||||||||| || || | Sbjct 39549925 TACCATGTGTACAGAAAAAGGCGAATTGGGCGATGAAGTGGATCGAC-----GGTTCAGA 39549871 Query 1456169 ACACTTTGCCGAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAG 1456227 | ||||| ||| | | | | ||||||| | || || || || || || || || || Sbjct 39549870 ATCGTTTGCAGAGAGAATAATTGCCTTTGCCTGTGTTGAAGGAATATTCTTTTCTGGTAG 39549811 Query 1456228 TTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGT 1456273 || || || || || ||| | |||||||| || | ||||| ||| Sbjct 39549810 CTTTTGTGCTATTTTCTGGTTGAAGAAGCGTGGGTTGATGCCGGGT 39549765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177663821591536