Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq15 187 3e-42 seq14 176 6e-39 seq9 111 2e-19 >seq15 Length=171247636 Score = 187 bits (206), Expect = 3e-42 Identities = 570/872 (65%), Gaps = 12/872 (1%) Strand=Plus/Plus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 || || || || ||||| | ||||| |||||||| || || || | ||| || || Sbjct 39549415 TTCTGATACTCCCCAACCCTCTTCTCAAAAAAATTCGTCTTCCCCTGCAACGAAATCAAC 39549474 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445 ||||| ||||||||||||| | | ||| ||| | | ||||||| | | Sbjct 39549475 TCCATCCAATCAAACGGATTCGACACGCCATACAATTTCTCACATCCTAACGACCCCAGC 39549534 Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505 || ||||| |||||||| || || || |||||| ||| |||||| || | | Sbjct 39549535 AACCTATCCGCAACAAACTCAATATACTGACTCATCAACCCACCATTCATCCCAACCAAC 39549594 Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565 | |||| || || | |||||| | || || || || || || | | ||| Sbjct 39549595 CCACAGGGTAAGGCATCACAAACAAACTCCCTCTCAATCTCCACCGCATCCGCCACAATC 39549654 Query 39566 GATGTTACTACCTCATCACTCGG---TGGATGCAATAAATGTTTAAACATTAAGCAGGCG 39622 | | || ||| |||||| || || ||| || | || ||| ||||| ||| Sbjct 39549655 CCTTTCACCCGCTCCTCACTCAACTTTGTATTCAACAACT---TATACAGCAAGCAAGCG 39549711 Query 39623 AAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGC 39682 || || ||||| | ||||| |||| || || ||||| || || || | || ||| Sbjct 39549712 AAATCGCAATGCAAACCCTCGTCTCGCGATATCAACTCGTTCGAGAACGTTAAACCCGGC 39549771 Query 39683 ATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAAGATGCC 39741 || | |||||||| || | ||| || || ||| |||||| | ||||||||||| || || Sbjct 39549772 ATCAACCCACGCTTCTTCAACCAGAAAATAGCA-CAAAAGCTACCAGAAAAGAATATTCC 39549830 Query 39742 TTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTAT-CATTATGTATCCACT 39800 ||| || ||||| |||| | ||||||| | ||| | | | | ||||||| Sbjct 39549831 TTCAACACAGGCAAAGGCAATTATTCTCTCTGC-AAACGATTCTGAACCGTCGATCCACT 39549889 Query 39801 TCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAT 39860 || ||||||| || || |||| |||||| || ||||| || |||||| || | | Sbjct 39549890 TCATCGCCCAATTCGCCTTTTTCTGTACACATGGTATTGTCTCAATAGCACGGAACAAAC 39549949 Query 39861 AATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAAT 39920 | ||||||| || |||||| | || | || | | || ||| |||||||| || | Sbjct 39549950 GGTTTTTTTCAACAGAATCTTTGATGTACGATTCCAACAGCAAACTGTACATTTCAGAGT 39550009 Query 39921 GGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCT 39980 |||| || |||||||| || ||||| |||||||| | || || | || ||||| | Sbjct 39550010 GGATATTCTCAATCGCGATTTGAAAGCCGTAAAAGGCACGCGCCTCGGAGATCTGTACTT 39550069 Query 39981 CTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATG 40040 || || | | || | ||||| || || || || || || || || | Sbjct 39550070 CTTTCATGAAGCGGCCAGCGAGGTTTTCCAATACAATGCCGTCTGATGCAGCGAAGAAGG 39550129 Query 40041 CCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGAT-A 40099 | | ||| || |||| || | ||| | | || || | ||||| ||| | Sbjct 39550130 CGAGTACGTGAGTAATGAAGTGACGTTCGTTGTCGGTTAAGGAGTCCCAGT-GTTGTTGG 39550188 Query 40100 TCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATG 40159 |||| ||||| || |||||||| || ||||| || || || || |||||||||||||| Sbjct 39550189 TCTTGTGATAAGTCGACTTCTTCTGCGGTCCAGAATGAGGCTTCGGCCTTTTTGTACATT 39550248 Query 40160 TTCCATATATCACGATATTGTATTGGAAAAAT 40191 | ||| || | | ||||| ||||| || || Sbjct 39550249 TCCCAGATTTGTGGGTATTGGATTGGGAACAT 39550280 Score = 140 bits (154), Expect = 4e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| || || | |||| ||||| | ||| |||| | |||||| || ||||| ||| Sbjct 145647816 CCTCCTTGGTCAACATATCGAGCAGTATCGTTAAAGACACGCAGCATTGGGATAATGCCA 145647875 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| |||||||||||||| || |||||||| ||| || |||||| |||||| Sbjct 145647876 TTGGATGTACCATTTGTTCCACGTATGTAACTTCCAGTTGAACGGATATTATGAATAGAG 145647935 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| ||||| ||||| ||| ||| | |||||| ||||| || || ||||| Sbjct 145647936 ACACCAATTCCACCTGCTGATTTGCTGATAACAGCACATTCCTTCAAAGTATCGTATATG 145647995 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| |||||||| ||| ||||| | || ||||||||| Sbjct 145647996 CCCTCAATGCTATCGTCTTTCATGCATAACAGGAAACAGCTA 145648037 >seq14 Length=174509413 Score = 176 bits (194), Expect = 6e-39 Identities = 392/584 (67%), Gaps = 6/584 (1%) Strand=Plus/Minus Query 39611 ATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAAT 39670 || ||||| ||||| || || |||| || ||||||| ||||||||||| || ||| Sbjct 142133087 ATCAAGCACGCGAAATCGCAGTGTAAACCTTCATCTCGTGAGATTAATTCGTTTGAGAAT 142133028 Query 39671 GTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGA 39729 || ||||| ||||||| || |||||||| ||||| ||||| ||| || ||| ||| || Sbjct 142133027 GTCAGTCCCGGCATTAACCCGCGCTTTTTCAGCCAGAATATCGCA-CAGAAGCTTCCTGA 142132969 Query 39730 AAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACTTGTATCA 39787 ||||| || ||||| || ||||| |||| | | |||| | | | | | ||| Sbjct 142132968 GAAGAATATTCCTTCGACGCAGGCAAAAGCAATGATCCGCTCTGCAAACGATTCGGATC- 142132910 Query 39788 TTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATA 39847 | ||||| ||| | ||||||| |||||||||| | || || || ||||| || Sbjct 142132909 -CGTCGATCCATTTCAGCGCCCAATTGGCTTTCTTCTGGATGCAGGGGATGGTTTCAATC 142132851 Query 39848 GCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTA 39907 || ||| ||| || |||||| |||||| | || | || | ||||||||| Sbjct 142132850 GCGCGAAATAGACGATTCTTTTCAGTGGAATCTTTGATGTAGGATTCGAGTAACAGACTG 142132791 Query 39908 TACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 39967 ||||| || || |||||||||||||| || || ||||| ||||| || | || || Sbjct 142132790 TACATCTCGGAGTGGATGTTTTCAATGGCGATTTGAAAGCCGTAGAACGCACGCGCCTCG 142132731 Query 39968 GTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTA 40027 | || || || || |||| | || | ||||| || || || || | Sbjct 142132730 GCGATCTGGACTTCCTTCATGAATCGGCCGGCGAGGTTTTCGAGGACGATGCCGTCTGAA 142132671 Query 40028 GCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTC 40087 ||||| || || || | || || | || || | ||| || || | | | | Sbjct 142132670 GCGGCGAAGAAGGCGAGGACGTGAGTGATGAAGTGGCGTTCGCCGTCGGTTAGGGTTTCC 142132611 Query 40088 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCC 40147 || | | | |||| ||| | ||||||||||| |||||||| || || ||||| || Sbjct 142132610 CATTGACGGTGGTCTTGTGAGAGGTCTACTTCTTCTGCTGTCCAGAATGAGGCCTCGGCT 142132551 Query 40148 TTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAAT 40191 ||||||||||| | ||| || | | ||||| ||||| || || Sbjct 142132550 TTTTTGTACATTTCCCAGATTTGGGGGTATTGGATTGGGAACAT 142132507 >seq9 Length=209865144 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| ||||| | || | ||| || | || |||| | || ||| || ||||| ||| Sbjct 123174121 CCTCCTTGATCAACATAACGGGCGGTATCGTTGAAGACACGCAACATTGGGATAATGCCA 123174180 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| |||||||||| || || ||||| ||| | | ||||| ||| || ||| Sbjct 123174181 TTGGATGTACCATTTGTCCCGCGTATGTAACTCCCTGTCGAACGAATGTTATGAACAGAA 123174240 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| || || ||||| ||| ||| | |||||| ||||| ||||||||||| Sbjct 123174241 ACACCAATCCCACCTGCTGATTTGCTGATAACAGCACATTCCTTCAAAGTGTCATATATG 123174300 Query 69931 CCCTCTATGCTATCATCTATCATG 69954 || || |||||||||||| ||||| Sbjct 123174301 CCTTCAATGCTATCATCTTTCATG 123174324 Score = 86.0 bits (94), Expect = 9e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || ||||| || | || ||||| || || |||||||| ||| || | || || Sbjct 123174741 GTCCCTGCATTGAAGAGGGTGGGAGAAGCATGTGTGAACCACCTTTGTGACATCAAATGA 123174800 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || || | || | || || || || | ||||| || | || || | ||||| | Sbjct 123174801 TAAGTCTTGATGACAGAATCAATGTCATCTTTGTGAATCCCAACTGCAACCCTCATCAGC 123174860 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 ||||| ||||||| ||| || || || || ||||||||||||||| | || || Sbjct 123174861 ATATGTTGAGGTCTTTCCACAACCTTCCCTTTGATCTTCAACAGGTATGATCTCTCAAGT 123174920 Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 |||||||| |||||||| | || |||||| | ||||| || || Sbjct 123174921 GTTTTAAAGCCAAAATAATCATAATCAAAGTCCCGATCGTATATGAT 123174967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686895680041920