Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq15 188 6e-43 seq14 152 4e-32 >seq15 Length=171247636 Score = 188 bits (208), Expect = 6e-43 Identities = 399/585 (68%), Gaps = 14/585 (2%) Strand=Plus/Minus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| ||||| ||||| | | || ||| ||||||||||||| || | || ||||| | Sbjct 39550279 TGTTCCCAATCCAATACCCACAAATCTGGGAAATGTACAAAAAGGCCGAAGCCTCATTCT 39550220 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAAACCAC 43826 |||| ||||||||||| || || | ||||| | ||| ||| | |||| | || Sbjct 39550219 GGACCGCAGAAGAAGTCGACTTATCACAAGACCAACAACACTGGGACTCCTTAAC-CGAC 39550161 Query 43827 AA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTC 43885 || ||| || || || || || | || || || ||||| ||||| || || Sbjct 39550160 AACGAACGTCACTTCATTACTCACGTACTCGCCTTCTTCGCTGCATCAGACGGCATTGTA 39550101 Query 43886 AATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTT 43945 ||||| | | | | || || | ||||||| || | | || || || ||| Sbjct 39550100 TTGGAAAACCTCGCTGGCCGCTTCATGAAAGAAGTACAGATCTCCGAGGCGCGTGCCTTT 39550041 Query 43946 TATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGAT 44005 || || |||||||| || || || ||||| || || |||||||||||| | ||| | || Sbjct 39550040 TACGGCTTTCAAATCGCGATTGAGAATATCCACTCTGAAATGTACAGTTTGCTGTTGGAA 39549981 Query 44006 ACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACC- 44064 |||||||||||||| || || | || ||||| ||| || || ||| |||| Sbjct 39549980 TCGTACATCAAAGATTCTGTTGAAAAAAACCGTTTGTTCCGTGCTATTGAGACAATACCA 39549921 Query 44065 TGCGATTAAACATAAAGCAGACT-GGGCCCTTAAATGGATAAA---TTCAAATGATTCTT 44120 || | || | | |||| || | |||| | || ||||| | |||| || || | Sbjct 39549920 TGTG--TACAGAAAAAGGCGAATTGGGCGATGAAGTGGATCGACGGTTCA---GAATCGT 39549866 Query 44121 TTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG-ATCGTTT 44179 ||| ||| || | | || ||||| ||| ||||| || |||||||| || | | ||| Sbjct 39549865 TTGCAGAGAGAATAATTGCCTTTGCCTGTGTTGAAGGAATATTCTTTTCTGGTAGCTTTT 39549806 Query 44180 GCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAG 44239 | | | || || ||||| ||||| || || |||||||| || || ||||| || || ||| Sbjct 39549805 GTG-CTATTTTCTGGTTGAAGAAGCGTGGGTTGATGCCGGGTTTAACGTTCTCGAACGAG 39549747 Query 44240 TTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 || ||| || || || || || ||||||||||| ||||||||| Sbjct 39549746 TTGATATCGCGAGACGAGGGTTTGCATTGCGATTTCGCTTGCTTG 39549702 >seq14 Length=174509413 Score = 152 bits (168), Expect = 4e-32 Identities = 387/581 (67%), Gaps = 6/581 (1%) Strand=Plus/Plus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| ||||| ||||| | | || ||| |||||||||||||||| |||| ||||| | Sbjct 142132508 TGTTCCCAATCCAATACCCCCAAATCTGGGAAATGTACAAAAAAGCCGAGGCCTCATTCT 142132567 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAAACCAC 43826 |||||||||||||||| || | | ||||| || ||| | ||| | || Sbjct 142132568 GGACAGCAGAAGAAGTAGACCTCTCACAAGACCACCGTCAATGGGAAACCCTAAC-CGAC 142132626 Query 43827 AA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTC 43885 ||| || || || || || | || || || || || ||||| || ||| Sbjct 142132627 GGCGAACGCCACTTCATCACTCACGTCCTCGCCTTCTTCGCCGCTTCAGACGGCATCGTC 142132686 Query 43886 AATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTT 43945 ||||| | | | || || | | ||||| || | | || || || || Sbjct 142132687 CTCGAAAACCTCGCCGGCCGATTCATGAAGGAAGTCCAGATCGCCGAGGCGCGTGCGTTC 142132746 Query 43946 TATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGAT 44005 || || |||||||| ||||| ||||| || || || || ||||||||||| | | || Sbjct 142132747 TACGGCTTTCAAATCGCCATTGAAAACATCCACTCCGAGATGTACAGTCTGTTACTCGAA 142132806 Query 44006 ACGTACATCAAAGATGGGCAC-GAGAAGCATCGATTGTTTAATGCGATAGAAA-CAGTAC 44063 | |||||||||||| ||| || ||| |||| | ||| ||||| |||| || | Sbjct 142132807 TCCTACATCAAAGAT-TCCACTGAAAAGAATCGTCTATTTCGCGCGATTGAAACCATCCC 142132865 Query 44064 CTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTG 44123 |||| || | | ||||| | ||||| || |||||||| | | || || |||| Sbjct 142132866 CTGC-ATCCAGAAGAAAGCCAATTGGGCGCTGAAATGGATCGACGGATCCGAATCGTTTG 142132924 Query 44124 GAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGG 44183 ||| || | | || ||||| || ||||| || ||||| |||||| || | Sbjct 142132925 CAGAGCGGATCATTGCTTTTGCCTGCGTCGAAGGAATATTCTTCTCAGGAAGCTTCTGTG 142132984 Query 44184 CCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAA 44243 | ||||| ||| | || || || || || ||||| || |||| || ||||| || |||| Sbjct 142132985 CGATATTCTGGCTGAAAAAGCGCGGGTTAATGCCGGGACTGACATTCTCAAACGAATTAA 142133044 Query 44244 TAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 | || |||||||| ||||| |||||||| || |||||| Sbjct 142133045 TCTCACGAGATGAAGGTTTACACTGCGATTTCGCGTGCTTG 142133085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397448598375640