Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq17 131 1e-25 seq3 129 5e-25 seq8 113 4e-20 seq16 104 2e-17 seq12 102 7e-17 seq4 96.9 3e-15 seq1 91.5 1e-13 seq15 89.7 4e-13 >seq17 Length=214723238 Score = 131 bits (144), Expect = 1e-25 Identities = 178/245 (73%), Gaps = 5/245 (2%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 || || || | ||| || |||||||| | ||| || || || || || |||||||| ||| Sbjct 210026222 CCACCACGGAGCCGTAACACCAAATGGAGCGTTGACTCCTTCTGGATGTTGTAGTCCGCT 210026281 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 ||| || |||||||||||||||| |||||| | ||||| ||||| || ||||| || Sbjct 210026282 AGGGTTCTGC-CGTCTTCGAGCTGTTTTCCGGCGAAGATGAGCCGCTGCTGGTCCGGTGG 210026340 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || ||||| || ||||||| |||| | | || | ||||| | || ||| || Sbjct 210026341 GATGCCTTCTTTGTCTTGGATCTTGGCCTTCACGTTGTCGATTGTGTCGGAGGATTCGAC 210026400 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCA---TAGCTGCTAA 27256 || | ||||| | || ||||| || |||||||| ||||| |||| | |||||| Sbjct 210026401 CTCCAACGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTGGCTGCTTG 210026460 Query 27257 AAATT 27261 ||||| Sbjct 210026461 AAATT 210026465 >seq3 Length=168485022 Score = 129 bits (142), Expect = 5e-25 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || |||||||| || ||||| ||| || ||| || | |||||||||||||| || Sbjct 118895883 GTGGATTCTTTTTGGATGTTGTAATCGGCTAGGGTTCTGCCC-TCTTCGAGCTGTTTTCC 118895941 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | |||||||| ||||||||||| || | || ||||| || ||||||| ||| Sbjct 118895942 GGCGAAGATGAGACGTTGTTGATCCGGTGGGATTCCTTCTTTGTCTTGGATCTTGGCTTT 118896001 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | | || | ||||| | | ||| ||||||||||| || | ||| || || || || Sbjct 118896002 GACGTTGTCGATTGTGTCGGAGCTTTCGACTTCTAGAGTGATTGTTTTTCCGGTTAGGGT 118896061 Query 27230 TTTCACAAAGATTTGCAT 27247 ||| |||||||| ||||| Sbjct 118896062 TTTGACAAAGATCTGCAT 118896079 >seq8 Length=153252196 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG-C 27078 ||| ||||| | ||||| || | || | || || ||||| || || ||||||||| | Sbjct 2509531 GCCACCGCGTAGCCGCAGCACAAGGTGGAGAGTCGACTCTTTCTGGATGTTGTAGTCGGC 2509472 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | ||| || ||||||| |||||||| |||||| | |||||||||||||| ||||| | Sbjct 2509471 TAGGGTTCTGC-CGTCTTCAAGCTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGTG 2509413 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || |||||| |||| | | || | ||||| | || ||| | Sbjct 2509412 GGATGCCTTCCTTGTCTTGAATCTTGGCCTTCACGTTGTCGATCGTGTCGGAGGATTCCA 2509353 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || | || || | || ||||| || |||||||| ||||| ||||| Sbjct 2509352 CCTCCAATGTGATCGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 2509304 >seq16 Length=188620566 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 27030 AACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT-TGCG 27088 |||| ||| |||| ||| | || || || || || || |||||||| | || | |||| Sbjct 106906430 AACCTCAACACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAGTC-CGCAAGAGTGCG 106906372 Query 27089 CTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTC 27148 |||||||||||||||| || ||| | ||||| | ||| || ||||| || | ||||| Sbjct 106906371 ACCGTCTTCGAGCTGTTTCCCAGCGAAGATGAGCCTCTGCTGGTCCGGTGGGATGCCCTC 106906312 Query 27149 TTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGT 27208 || || |||||| || | | | || | ||||| | | ||| ||||| ||||| Sbjct 106906311 CTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCGGAGCTTTCGACTTCCAGAGT 106906252 Query 27209 TATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | ||||| || || ||||| || ||||| ||||| Sbjct 106906251 GATTGTCTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 106906213 >seq12 Length=166489593 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 || || || | |||||| |||| ||| | || || || || || || ||||| || ||| Sbjct 157664015 CCACCACGAAGCCGCAACACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAATCCGCT 157664074 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 ||| || |||||||||||||||| |||||| |||| || || || || ||||| || Sbjct 157664075 AGGGTTCTGC-CGTCTTCGAGCTGTTTTCCGGCGAAAATTAGCCGTTGCTGGTCCGGTGG 157664133 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || || || || |||||| |||| | | || | ||||| | || ||| || Sbjct 157664134 AATGCCTTCCTTGTCCTGGATCTTTGCCTTCACGTTGTCGATCGTGTCGGAGGATTCGAC 157664193 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | || ||||| || |||||||| ||||| ||||| Sbjct 157664194 CTCCAACGTGATCGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 157664241 >seq4 Length=178899001 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || ||||| || ||||| ||| || | |||| ||||||| | || |||||| Sbjct 81196119 GTTGACTCCTTTTGGATGTTGTAATCGGCCAAGGTGCGGCCGTCTTCCAATTGCTTACCG 81196178 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || |||||||| || || || || | |||||| || || ||||| ||| Sbjct 81196179 GCGAAGATCAGACGCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGAATCTTTGCTTTG 81196238 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | || || | | ||| || || || || || | || || |||| ||| Sbjct 81196239 ACGTTATCGATGGTATCGGAGCTTTCGACCTCAAGGGTGATGGTCTTACCAGTCAAAGTC 81196298 Query 27231 TTCACAAAGATTTGCATA 27248 |||||||||||||||||| Sbjct 81196299 TTCACAAAGATTTGCATA 81196316 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | || || ||| |||| ||| | || || || ||||| || ||||| || | | Sbjct 81195861 CCTCCCCTCAGCCTCAACACCAGATGCAGAGTCGACTCCTTTTGGATGTTGTAATC-CGC 81195919 Query 27081 ATGT-TGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | | | ||||||| | ||||||||| || | ||||| | ||| || ||||| || Sbjct 81195920 AAGAGTCCTGCCGTCTTCCAACTGTTTACCCGCAAAGATGAGCCTCTGCTGGTCCGGTGG 81195979 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||| || || |||||| ||||| | | || | |||||| | | || || Sbjct 81195980 GATACCCTCCTTGTCCTGGATCTTTGCTTTCACGTTGTCGATAGTGTCGGAGCTCTCGAC 81196039 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | || || | || || |||| || || ||||||||||||||| Sbjct 81196040 CTCCAAGGTGATGGTCTTACCGGTCAAGGTCTTAACAAAGATTTGCATA 81196088 >seq1 Length=153905722 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTC 27097 |||||||| | ||||| || || || || ||||||||| || ||| || ||||||| Sbjct 17864782 ACCAAATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTGC-CGTCTTC 17864724 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 ||||| || ||||| | || | | ||| || ||||| || | ||||| ||||| Sbjct 17864723 AAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGGATGCCCTCCTTATCCTG 17864664 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||| ||| | | || | ||||| | |||||| || | ||| || | || Sbjct 17864663 GATCTTTGCTTTGACATTGTCAATGGTGTCGGAACTTTCAACCTCCAAAGTGATCGTCTT 17864604 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 ||| |||| || ||||||||||| |||||| || Sbjct 17864603 GCCGGTCAATGTCTTCACAAAGATCTGCATACCT 17864570 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | ||||| || |||||||| | |||||| || || ||||| || || || | Sbjct 17865028 CCACCTCTCAACCTCAGCACCAAATGAAGCGTAGATTCCTTCTGAATGTTATAATCCGCC 17864969 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | ||| | ||||| |||||||||||||| | || || | |||||| || || || Sbjct 17864968 AAAGTCCGCCCATCTTCCAGCTGTTTACCGGCAAAGATCAGCCTCTGTTGGTCTGGTGGG 17864909 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || |||||||| ||||| || | | || | || || | | |||||| Sbjct 17864908 ATCCCTTCTTTATCTTGAATCTTTGCCTTGACATTGTCAATCGTATCCGAGCTCTCAACT 17864849 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||| || | || || |||| || || |||||||| |||||| Sbjct 17864848 TCAAGAGTGATGGTCTTTCCAGTCAACGTCTTAACAAAGATCTGCATA 17864801 >seq15 Length=171247636 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || || ||||| ||||||||| || | || || | ||||| ||||||||||| Sbjct 34348559 GTGGACTCCTTCTGAATGTTGTAGTCGGCTAAAGTACGGC-CATCTTCAAGCTGTTTACC 34348501 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| | || | ||||| || || || || | ||||||||||| |||||| || Sbjct 34348500 GGCAAAGATCAATCGCTGCTGGTCAGGTGGGATGCCCTCTTTATCTTGGATCTTAGCCTT 34348441 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | ||||||| | ||||||||| | ||| || | || || || | ||| Sbjct 34348440 GACATTATCAATGGTGTCTGAGCTTTCAACTTCCAAAGTGATTGTCTTTCCGGTTAAAGT 34348381 Query 27230 TTTCACAAAGATTTGCAT 27247 || |||||||| ||||| Sbjct 34348380 CTTAACAAAGATCTGCAT 34348363 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || || ||||| ||||||||| || | || || | ||||| ||||||||||| Sbjct 34231156 GTGGACTCCTTCTGAATGTTGTAGTCGGCTAAAGTACGGC-CATCTTCAAGCTGTTTACC 34231098 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 || | || | ||||| || || || || | ||||||||||| |||||| || Sbjct 34231097 AGCAAAGATCAATCGCTGCTGGTCAGGTGGGATGCCCTCTTTATCTTGGATCTTAGCCTT 34231038 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | ||||||| | ||||||||| | ||| || | || || || | ||| Sbjct 34231037 GACATTATCAATGGTGTCTGAGCTTTCAACTTCCAAAGTGATTGTCTTTCCGGTTAAAGT 34230978 Query 27230 TTTCACAAAGATTTGCAT 27247 || |||||||| ||||| Sbjct 34230977 CTTAACAAAGATCTGCAT 34230960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424926486659136