Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq17 120 4e-22 seq9 91.5 2e-13 seq6 91.5 2e-13 seq15 89.7 6e-13 seq14 89.7 6e-13 >seq17 Length=214723238 Score = 120 bits (132), Expect = 4e-22 Identities = 275/412 (67%), Gaps = 4/412 (1%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 || || || || |||| || |||||||||| || | || || || | || || Sbjct 138181747 TCTAGAATGTCTGCGCGGTTGGTGGCCGCAACTACAATGATACCTGTGTTCCCTTCGAAC 138181688 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || | | || |||| ||||||||||| |||||||| || | Sbjct 138181687 CCATCCATTTCAGTCAAAAGCTGGTTAAGCGTTTGTTCTCTTTCATCATTCCCTCCTCCA 138181628 Query 11603 CCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGT 11662 ||| | | | ||| | || ||||||||||| ||||||| || || ||||| ||| Sbjct 138181627 ATACCCGTTCCTCTTTGTCTCCCAACCGCATCAATTTCATCAACAAATACGATACACGGT 138181568 Query 11663 TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAAC 11722 ||| || || ||| || ||||| ||||||||| |||||| |||||||||||| Sbjct 138181567 GCATTCTCTTTTGCCTTTTTGAACAGATCTCGAACCCTTGAGGCACCAACACCAACAAAC 138181508 Query 11723 ATCTCCACAAAGTTTGCGGCAGAGCACTG--GATGAATGGGACATTTGATTCACCCGCGA 11780 || || ||||| || || | | || || ||| |||||| || |||||| || | Sbjct 138181507 ATTTCAACAAA--TTCCGAACCTGAAATGGAGAAGAAGGGGACACCTGCTTCACCAGCAA 138181450 Query 11781 TGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGG 11840 | ||| || | || || || || || ||||| |||| | ||||| | || | Sbjct 138181449 TAGCTTTAGCCAATAGTGTTTTCCCTGTTCCTGGGGGACCCACAAGAAGAACACCCTTTG 138181390 Query 11841 GGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCAC 11892 | || | |||||| || | | ||||| |||| ||| | ||| || || Sbjct 138181389 GAATTCTAGCACCAACAGCAGTAAACCTCTCCGGTTTCTTCAAAAACTCAAC 138181338 Score = 113 bits (124), Expect = 6e-20 Identities = 391/608 (64%), Gaps = 4/608 (1%) Strand=Plus/Plus Query 11293 TTCATTGAGAAGGTTTGCCAACTCCGCACCAGAGAATCCAGTTGTTTGCTTGGCAATACT 11352 ||| || | ||| || || | || || ||| ||||||| |||| | ||||||| Sbjct 143474151 TTCGTTTAAAAGATTCGCTAGATCAGCTCCACTAAATCCAGGTGTTCTCATGGCAATCAC 143474210 Query 11353 CGCGAGACTGACATCTTCAGATAACTTCTTGTCTCGGGCATGGACTCCCAAAATCTTCTT 11412 | | ||| ||||| | |||||||||| | ||||| || || |||| | Sbjct 143474211 CTCAAGAGAAACATCCTTGTCAAACTTCTTGTTGCCAGCATGAACCTTTAAGATCTCTGT 143474270 Query 11413 GCGACCTCGCACACTTGGAAGACCCACTTGGATCTTGCGATCAAAACGACCCGGGCGAAG 11472 | ||||| ||| ||||| | | || | || | |||||| | ||||| | | Sbjct 143474271 TCTTCCTCGGACATCTGGAACATCAACCGATACCTGTCTATCAAATCTTCCCGGTCTCAA 143474330 Query 11473 GAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTC 11532 | ||| || || || || | || || || ||||||| || | || || || | Sbjct 143474331 TAAGGCAGAGTCTAGAATGTCTGCACGGTTGGTAGCCGCAACTACAATGATACCCGTGTT 143474390 Query 11533 ATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATT 11592 ||||| || ||||| ||||| | | || |||| |||||||||| |||||||| Sbjct 143474391 TCCTTCAAACCCGTCCATTTCGGTCAAAAGCTGGTTAAGCGTTTGTTCTCGTTCATCATT 143474450 Query 11593 TGCTGGCATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAG 11650 | || | | | || || | | ||| | || |||||||| || ||||||| || Sbjct 143474451 CCC--GCCTCCGATACCCGCCCCTCTTTGTCTCCCAACCGCATCGATTTCATCAACAAAC 143474508 Query 11651 ACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCC 11710 |||||||| ||| ||| || || | | || || || || || || |||||| Sbjct 143474509 ACAATACACGGTGCATTCTCTTTCGCCTTCTTGAAAAGGTCCCGGACTCTCGAGGCACCA 143474568 Query 11711 ACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGAT 11770 ||||||||||||||||| ||||| | | | || | || ||||||||| | | Sbjct 143474569 ACACCAACAAACATCTCAACAAATTCCGAACCGGAAATCGAGAAAAATGGGACACCAGCT 143474628 Query 11771 TCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGG 11830 ||||| || || || || || || || || || || || || |||| | ||||| Sbjct 143474629 TCACCAGCAATAGCCTTAGCCAGCAGAGTTTTACCTGTTCCCGGGGGACCCACAAGAAGA 143474688 Query 11831 GCGCCTCGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCC 11890 | || ||| ||| |||||| || | | |||||||||| ||| | ||| || Sbjct 143474689 ACACCCTTGGGAATCCGAGCACCAACAGCAGTAAACCTCTCGGGTTTCTTTAAAAACTCA 143474748 Query 11891 ACAATCTC 11898 |||| ||| Sbjct 143474749 ACAACCTC 143474756 >seq9 Length=209865144 Score = 91.5 bits (100), Expect = 2e-13 Identities = 167/239 (70%), Gaps = 7/239 (3%) Strand=Plus/Plus Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999 ||| || || ||||| || |||||||||||||| || | || || ||||| | ||| Sbjct 123174728 CTGAGGCCTGGGTGTCCCTGCATTGAAGAGGGTGGGAGAAGCATGTGTGAACCACCTTTG 123174787 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 |||||| | || |||| | ||||||||||||||| || ||| || || | ||| Sbjct 123174788 TGACATCAAATGATAAGTCTTGATGACAGAATCAATGTCATCTTTGTGAATCCCAACTGC 123174847 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA--AGA 112117 |||| ||| | ||| | || || |||||| | | || | || | || | || Sbjct 123174848 AACCCTCATCAGCATATGTTGAGGTCTTTCCACAACCTTCCCTTTGATC--TTCAACAGG 123174905 Query 112118 TA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCGCTTCGTAT 112175 || | || ||||||| ||||| | ||||| ||| || ||||| ||||||| |||||| Sbjct 123174906 TATGATC-TCTCAAGTGTTTTAAAGCCAAAATAATCATAATCAAAGTCCCG-ATCGTAT 123174962 >seq6 Length=103887801 Score = 91.5 bits (100), Expect = 2e-13 Identities = 192/282 (68%), Gaps = 12/282 (4%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| || ||||| || || | || |||||||| |||||||| ||||||||| || | | Sbjct 101244924 AAACCCGTCCATTTCAGTCAACAACTGATTAATAGTTTGTTCCCTCTCATCA-TTCCCGC 101244982 Query 11599 CA--TACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 || || ||| || | | ||| | || |||||||| |||||||| || || ||||| Sbjct 101244983 CACCTA-AACCCGCTCCTCTCTGCCTTCCTACCGCATCTATCTCATCGATAAACACAATG 101245041 Query 11657 CATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCAC 11712 || || || |||| || ||||||| | ||| | |||||| ||||| || Sbjct 101245042 CAAGGCGCTTTCGATTTC----GCCTTTTCAAACAAATCCCTAACCCTAGATGCACCAAC 101245097 Query 11713 ACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTC 11772 ||| ||||||| ||| || || | | || | ||| || || || || | ||| Sbjct 101245098 ACCTACAAACAACTCAACGAATTCCGACGCTGCACACGAGAAAAACGGCACCCCCGCTTC 101245157 Query 11773 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 ||| || | ||| || || | |||||||| || || || || Sbjct 101245158 ACCTGCAACGGCCCGAGCCAAAAGGGTCTTCCCGGTCCCCGG 101245199 >seq15 Length=171247636 Score = 89.7 bits (98), Expect = 6e-13 Identities = 142/203 (70%), Gaps = 3/203 (1%) Strand=Plus/Plus Query 122676 ACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTT 122735 |||||| ||||| || || | || || ||||| || ||| ||||| | || ||||| Sbjct 39549726 ACCCTCGTCTCGCGATATCAACTCGTTCGAGAACGTTAAACCCGGCATCAACCCACGCTT 39549785 Query 122736 CTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAA 122795 ||||||||| ||||||| || || || || ||||| || || || ||||| ||||| Sbjct 39549786 CTTCAACCAGAAAATAGCACAAAAGCTACCAGAAAAGAATATTCCTTCAACACAGGCAAA 39549845 Query 122796 CGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCCCATTT 122855 |||| | | || || || || || | || | ||| ||||| ||||| || Sbjct 39549846 GGCAATTATTCTCTCTGCAAACGATTCTGA---ACCGTCGATCCACTTCATCGCCCAATT 39549902 Query 122856 CGCCTTCTTCTCAATACATGGTA 122878 |||||| |||| | |||||||| Sbjct 39549903 CGCCTTTTTCTGTACACATGGTA 39549925 Score = 86.0 bits (94), Expect = 8e-12 Identities = 165/237 (70%), Gaps = 5/237 (2%) Strand=Plus/Plus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TG 111999 || ||| ||||||| || |||||||| ||||| || | || ||| ||||| |||| || Sbjct 145648141 TGAGGTGTTGGTGTCCCTGCATTGAATAGGGTGGGAGAAGCATGAGTGAACC-ACCTCTG 145648199 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 |||||| | || |||| | || ||||||||||| || ||| || || | | Sbjct 145648200 TGACATCAAATGATAAGTCTTGATTACCGAATCAATGTCATCTTTGTGAATCCCAACCGA 145648259 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGAT 112118 |||| ||| ||||| | || || ||| || | | || || | | | | |||| Sbjct 145648260 AACCCTCATCAACATATGTTGAGGTCTTT-CAACAACCTTCCCTCCAATCTTCAATAGAT 145648318 Query 112119 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCGCTTCGTAT 112175 | | ||||||||||||| | |||||| ||| || ||||| ||||||| |||||| Sbjct 145648319 ATGACCTCTCAAGGGTTTTAAAACCAAAATAATCATAATCAAAGTCCCG-ATCGTAT 145648374 >seq14 Length=174509413 Score = 89.7 bits (98), Expect = 6e-13 Identities = 191/282 (68%), Gaps = 10/282 (4%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGC-TG 11597 ||| |||||||| || || | || |||||||| |||||||| ||||||||||| | Sbjct 14537972 AAAACCATCCATTTCCGTCAACAACTGATTAATCGTTTGTTCCCTCTCATCATTCCCACC 14538031 Query 11598 GCATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 | || ||| |||| | ||| | || || ||||| ||||||||||| || ||||| | Sbjct 14538032 ACCTA-AACCCGCACCTCTCTGCCTACCAACTGCATCTATCTCATCAATAAACACAATGC 14538090 Query 11658 ATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACA 11713 | || || |||| || | ||||| | ||| | ||| || ||||| ||| Sbjct 14538091 ACGGCGCTTTCGATTTC----GCCTTCTCAAACAAATCCCTAACTCTAGAAGCACCAACA 14538146 Query 11714 CCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCA 11773 || ||||||| || ||||| | | |||| || || || || || | ||| Sbjct 14538147 CCCACAAACAATTCGACAAATTCCGAAGCAGCACATGAGAAAAACGGCACTCCAGCCTCA 14538206 Query 11774 CCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGC 11815 ||||| | ||| || || | |||||||| || || || ||| Sbjct 14538207 CCCGCAACGGCCCGAGCTAAAAGGGTCTTCCCGGTTCCAGGC 14538248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628020004588800