Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq14 118 1e-21 seq17 113 6e-20 seq15 113 6e-20 >seq14 Length=174509413 Score = 118 bits (130), Expect = 1e-21 Identities = 183/261 (70%), Gaps = 3/261 (1%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| | ||| || || || ||||| | ||| || ||||| ||| || ||||| | || Sbjct 142133067 GTGTAAACCTTCATCTCGTGAGATTAATTCGTTTGAGAATGTCAGTCCCGGCATTAACCC 142133008 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 ||||| |||| |||||| |||||||| || || |||||||| || || || || || Sbjct 142133007 GCGCTTTTTCAGCCAGAATATCGCACAGAAGCTTCCTGAGAAGAATATTCCTTCGACGCA 142132948 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 130206 || || |||| || ||||| ||||| || ||| | || | ||| |||| ||| Sbjct 142132947 GGCAAAAGCAATGATCCGCTCTGCAAACGATTCGGA---TCCGTCGATCCATTTCAGCGC 142132891 Query 130207 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 130266 ||| | || || |||| ||| || |||| ||| | ||||| ||| || ||||| Sbjct 142132890 CCAATTGGCTTTCTTCTGGATGCAGGGGATGGTTTCAATCGCGCGAAATAGACGATTCTT 142132831 Query 130267 TTCTGATGGATCTTTGATGTA 130287 ||| | | |||||||||||| Sbjct 142132830 TTCAGTGGAATCTTTGATGTA 142132810 Score = 93.3 bits (102), Expect = 5e-14 Identities = 191/281 (68%), Gaps = 10/281 (4%) Strand=Plus/Plus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| |||||||| || ||||| | ||||| || |||||||| | ||||||||| || Sbjct 14537972 AAAACCATCCATTTCCGTCAACAACTGATTAATCGTTTGTTCCCTCTCATCATTCCCACC 14538031 Query 14212 -CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 14270 | || |||||||| | ||| |||| || || || || ||||| || || || || | Sbjct 14538032 ACCTAA-ACCCGCACCTCTCTGCCTACCAACTGCATCTATCTCATCAATAAACACAATGC 14538090 Query 14271 ATGG----TTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACA 14326 | || || |||| | | ||||| | ||| | ||||| ||||| ||| Sbjct 14538091 ACGGCGCTTTCGATTTCGCCTTC----TCAAACAAATCCCTAACTCTAGAAGCACCAACA 14538146 Query 14327 CCCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCA 14386 |||||||||| || ||||| | | || | |||| || || || || || ||| Sbjct 14538147 CCCACAAACAATTCGACAAATTCCGAAGCAGCACATGAGAAAAACGGCACTCCAGCCTCA 14538206 Query 14387 CCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 ||||| | ||| || || | ||||||||||| || || || Sbjct 14538207 CCCGCAACGGCCCGAGCTAAAAGGGTCTTCCCGGTTCCAGG 14538247 >seq17 Length=214723238 Score = 113 bits (124), Expect = 6e-20 Identities = 242/359 (67%), Gaps = 2/359 (1%) Strand=Plus/Minus Query 14110 GCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGT 14169 |||||| || ||||| | |||| ||| || || | || || |||||||| ||||| Sbjct 138181733 GCGGTTGGTGGCCGCAACTACAATGATACCTGTGTTCCCTTCGAACCCATCCATTTCAGT 138181674 Query 14170 CAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCACCCGCACTGCG 14229 ||| || || || | |||||||| | |||||||||| | | ||||| | | Sbjct 138181673 CAAAAGCTGGTTAAGCGTTTGTTCTCTTTCATCATTCCCTCCTCCAATACCCGTTCCTCT 138181614 Query 14230 TTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGC 14289 ||| | || || || ||||||||||| | || |||||||| ||| ||| || || Sbjct 138181613 TTGTCTCCCAACCGCATCAATTTCATCAACAAATACGATACACGGTGCATTCTCTTTTGC 138181554 Query 14290 AACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATT 14349 || || | |||||| || || |||||| ||||| |||||||| || ||||| | Sbjct 138181553 CTTTTTGAACAGATCTCGAACCCTTGAGGCACCAACACCAACAAACATTTCAACAAATTC 138181494 Query 14350 GGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGA 14408 | | ||| || | || ||||||||| | |||||| || || ||| || | | Sbjct 138181493 CGAACCTGAA-ATGGAGAAGAAGGGGACACCTGCTTCACCAGCAATAGCTTTAGCCAATA 138181435 Query 14409 GGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCA 14467 | || ||||| || ||||| || | ||||| |||| ||| || || |||||| Sbjct 138181434 GTGTTTTCCCTGTTCCTGGGGGACCCACAAGAAGAACACCCTTTGGAATTCTAGCACCA 138181376 Score = 107 bits (118), Expect = 2e-18 Identities = 247/362 (68%), Gaps = 10/362 (3%) Strand=Plus/Plus Query 14111 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 14170 ||||| || ||||| | |||| ||| ||||| | ||||| || ||||| || ||| Sbjct 143474356 CGGTTGGTAGCCGCAACTACAATGATACCCGTGTTTCCTTCAAACCCGTCCATTTCGGTC 143474415 Query 14171 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATAC--CACCCGCACTGC 14228 || || || || | |||||||| |||||||||||| | || | | |||||| | | Sbjct 143474416 AAAAGCTGGTTAAGCGTTTGTTCTCGTTCATCATTCCC--GCCTCCGATACCCGCCCCTC 143474473 Query 14229 GTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTC-ACGG 14287 ||| | || || || || |||||||| | || || ||||| ||| ||| || | Sbjct 143474474 TTTGTCTCCCAACCGCATCGATTTCATCAACAAACACAATACACGGTGCATTCTCTTTCG 143474533 Query 14288 GCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAA 14347 | ||| ||| | || || |||||| |||||| ||||| ||||||||||| ||||| Sbjct 143474534 CCTTCTTGAAA-AGGTCCCGGACTCTCGAGGCACCAACACCAACAAACATCTCAACAAAT 143474592 Query 14348 TTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAG 14406 | | ||||| || | || || ||||| || |||||| || || || || || Sbjct 143474593 TCCGAACCGGAA-ATCGAGAAAAATGGGACACCAGCTTCACCAGCAATAGCCTTAGCCAG 143474651 Query 14407 GAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGG-ATCCTGGCAC 14465 || || || || || || || || | ||||| |||| | |||| |||| |||| Sbjct 143474652 CAGAGTTTTACCTGTTCCCGGGGGACCCACAAGAAGAACACC-CTTGGGAATCCGAGCAC 143474710 Query 14466 CA 14467 || Sbjct 143474711 CA 143474712 >seq15 Length=171247636 Score = 113 bits (124), Expect = 6e-20 Identities = 152/210 (72%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 130033 ACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTT 130092 ||||||||| || || || | || |||||||| | ||| ||||| | || ||||| Sbjct 39549726 ACCCTCGTCTCGCGATATCAACTCGTTCGAGAACGTTAAACCCGGCATCAACCCACGCTT 39549785 Query 130093 CTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAA 130152 ||||||||||||||| |||||||| ||||| ||||| || || || ||||| || || Sbjct 39549786 CTTCAACCAGAAAATAGCACAAAAGCTACCAGAAAAGAATATTCCTTCAACACAGGCAAA 39549845 Query 130153 CGCAAAGAGACGCTCAGCAAAGGA-GCGGGACTTTGTATCAAACCACTTCATCGCCCACT 130211 |||| | | ||| ||||| || | | || || | ||||||||||||||| | Sbjct 39549846 GGCAATTATTCTCTCTGCAAACGATTCTGAAC----CGTCGATCCACTTCATCGCCCAAT 39549901 Query 130212 GCGCCTTTTTCTCGATACACGGGACGGTCT 130241 ||||||||||| | ||| || | |||| Sbjct 39549902 TCGCCTTTTTCTGTACACATGGTATTGTCT 39549931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618423387887680