Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq17 131 2e-25 seq14 104 3e-17 seq6 87.8 2e-12 >seq17 Length=214723238 Score = 131 bits (144), Expect = 2e-25 Identities = 278/406 (68%), Gaps = 18/406 (4%) Strand=Plus/Plus Query 9572 CGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTG 9629 || || || || || | |||| ||||| |||||| || |||| || ||||| || | Sbjct 143474356 CGGTTGGTAGCCGCAACTACAATGATACCCGTGTTTCCTT--CAAACCCGTCCATTTCGG 143474413 Query 9630 TCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATAC--CACCAGCACT 9687 ||||||| ||||||| |||||||| |||||||||||| | || | | ||| || | Sbjct 143474414 TCAAAAGCTGGTTAAGCGTTTGTTCTCGTTCATCATTCCC--GCCTCCGATACCCGCCCC 143474471 Query 9688 GCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGAT----TTT 9743 | ||| | || || ||||| || ||||||| || || || || ||| || ||| Sbjct 143474472 TCTTTGTCTCCCAACCGCATCGATTTCATCAACAAACACAATACACGGTGCATTCTCTTT 143474531 Query 9744 CGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCA 9803 ||| | ||| ||| || ||||| || | | ||| || ||||||||||||||||| | Sbjct 143474532 CGC---CTTCTTGAAA-AGGTCCCGGACTCTCGAGGCACCAACACCAACAAACATCTCAA 143474587 Query 9804 CAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGG 9862 |||| | | ||||| || | || || |||||| || |||||| ||||| || Sbjct 143474588 CAAATTCCGAACCGGAA-ATCGAGAAAAATGGGACACCAGCTTCACCAGCAATAGCCTTA 143474646 Query 9863 GCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTG 9922 || || ||||| ||||| || || || |||| | || || |||| |||||| Sbjct 143474647 GCCAGCAGAGTTTTACCTGTTCCCGGGGGACCCACAAGAAGAACACCCTTGGGAATCCGA 143474706 Query 9923 GCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAA 9968 || ||| || | ||||| |||| ||| | ||| || |||| Sbjct 143474707 GCACCAACAGCAGTAAACCTCTCGGGTTTCTTTAAAAACTCAACAA 143474752 Score = 129 bits (142), Expect = 7e-25 Identities = 306/457 (67%), Gaps = 4/457 (1%) Strand=Plus/Minus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGT-TTCATTATCAAA 9615 || || || || |||| || || || || | |||| |||||||| ||| | || || Sbjct 138181747 TCTAGAATGTCTGCGCGGTTGGTGGCCGCAACTACAATGATACCTGTGTTCCCT-TCGAA 138181689 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 |||||||| || |||||||| ||||||| |||||||| | |||||||||| || Sbjct 138181688 CCCATCCATTTCAGTCAAAAGCTGGTTAAGCGTTTGTTCTCTTTCATCATTCCCTCCTCC 138181629 Query 9676 ACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGG 9735 | ||| | | | ||| | || || |||||||| ||||||| || ||||| || || Sbjct 138181628 AATACCCGTTCCTCTTTGTCTCCCAACCGCATCAATTTCATCAACAAATACGATACACGG 138181569 Query 9736 TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAA 9795 | ||| || || || || ||||| || || | ||| || ||||||||||| Sbjct 138181568 TGCATTCTCTTTTGCCTTTTTGAACAGATCTCGAACCCTTGAGGCACCAACACCAACAAA 138181509 Query 9796 CATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAA 9854 ||| || ||||| | | | ||| || | || |||||||||| | |||||| |||| Sbjct 138181508 CATTTCAACAAATTCCGAACCTGAA-ATGGAGAAGAAGGGGACACCTGCTTCACCAGCAA 138181450 Query 9855 TGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTG 9914 | ||| || | || || || || || ||||| |||| | || || |||| || Sbjct 138181449 TAGCTTTAGCCAATAGTGTTTTCCCTGTTCCTGGGGGACCCACAAGAAGAACACCCTTTG 138181390 Query 9915 GAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTT 9974 |||| | || ||| || | ||||| |||| ||| | ||| || || | ||| Sbjct 138181389 GAATTCTAGCACCAACAGCAGTAAACCTCTCCGGTTTCTTCAAAAACTCAACGACTTCCA 138181330 Query 9975 CCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 10011 || || | ||| || |||| | ||| | ||||| Sbjct 138181329 TGAAATCCTGTTTTGCTTCGTCTACTCCCGCCACATC 138181293 >seq14 Length=174509413 Score = 104 bits (114), Expect = 3e-17 Identities = 197/282 (70%), Gaps = 10/282 (4%) Strand=Plus/Plus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGC-TG 9671 |||||||||||| || ||||| | || ||||| |||||||||| ||||||||| | Sbjct 14537972 AAAACCATCCATTTCCGTCAACAACTGATTAATCGTTTGTTCCCTCTCATCATTCCCACC 14538031 Query 9672 GCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 | || ||| |||| | ||| | || || ||||| ||||||||||| || || |||| Sbjct 14538032 ACCTA-AACCCGCACCTCTCTGCCTACCAACTGCATCTATCTCATCAATAAACACAATGC 14538090 Query 9732 ATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCACA 9787 | || ||||| || || ||||| | ||||| || || || | || || ||| Sbjct 14538091 ACGG--CGCTTTCGATTTCGCCTTCTCAAACAAATCCC-TA-ACTCTAGAAGCACCAACA 14538146 Query 9788 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 9847 || ||||||| || ||||| | | || | |||| || || || || || ||| Sbjct 14538147 CCCACAAACAATTCGACAAATTCCGAAGCAGCACATGAGAAAAACGGCACTCCAGCCTCA 14538206 Query 9848 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 9889 ||||||| ||| || || | ||| ||||| || || || ||| Sbjct 14538207 CCCGCAACGGCCCGAGCTAAAAGGGTCTTCCCGGTTCCAGGC 14538248 >seq6 Length=103887801 Score = 87.8 bits (96), Expect = 2e-12 Identities = 194/282 (69%), Gaps = 12/282 (4%) Strand=Plus/Plus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| || ||||| || ||||| | || |||||||||||||||| ||||||||| | | Sbjct 101244924 AAACCCGTCCATTTCAGTCAACAACTGATTAATAGTTTGTTCCCTCTCATCATTC-CCGC 101244982 Query 9673 CA--TACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 || || ||| || | | ||| |||| || ||||| |||||||| || || || ||| Sbjct 101244983 CACCTA-AACCCGCTCCTCTCTGCCTTCCTACCGCATCTATCTCATCGATAAACACAATG 101245041 Query 9731 CATGGTTGATTTTCGCGAGCGAC--TTCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 9786 || || ||||| || | |||||| | ||||| || || || | || || || Sbjct 101245042 CAAGG--CGCTTTCGATTTCGCCTTTTCAAACAAATCCC-TA-ACCCTAGATGCACCAAC 101245097 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9846 ||| ||||||| ||| || || | | || | ||| || || || || | ||| Sbjct 101245098 ACCTACAAACAACTCAACGAATTCCGACGCTGCACACGAGAAAAACGGCACCCCCGCTTC 101245157 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 ||| |||| ||| || || | ||| ||||| || || || || Sbjct 101245158 ACCTGCAACGGCCCGAGCCAAAAGGGTCTTCCCGGTCCCCGG 101245199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583249659718720