Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq15 114 1e-20 >seq15 Length=171247636 Score = 114 bits (126), Expect = 1e-20 Identities = 165/227 (73%), Gaps = 8/227 (4%) Strand=Plus/Minus Query 59890 GTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAAT-GGGCCATG 59948 || |||||||||| || ||||| || || | | |||||| |||| |||| ||| Sbjct 39549949 GTTTGTTCCGTGCTATTGAGACAATACCATGTGT-ACAGAAAAAGGCGAATTGGGCGATG 39549891 Query 59949 CAGTGGAT-GA--GTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTG 60005 ||||||| || || | || ||| |||||| | | | || || ||||| || || Sbjct 39549890 AAGTGGATCGACGGTTC---AGAATCGTTTGCAGAGAGAATAATTGCCTTTGCCTGTGTT 39549834 Query 60006 GAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTC 60065 |||||||| ||||| ||||| || ||||||||||||||| | || |||||||| | Sbjct 39549833 GAAGGAATATTCTTTTCTGGTAGCTTTTGTGCTATTTTCTGGTTGAAGAAGCGTGGGTTG 39549774 Query 60066 ATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGG 60112 |||||||| | | ||||| |||||| |||| || || |||||||| Sbjct 39549773 ATGCCGGGTTTAACGTTCTCGAACGAGTTGATATCGCGAGACGAGGG 39549727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548514323176320