Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq15 91.5 2e-13 seq12 89.7 6e-13 seq14 84.2 2e-11 seq16 82.4 8e-11 seq5 82.4 8e-11 >seq15 Length=171247636 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681 ||||||||| |||| ||||| |||| ||||||||||||||||||||||||||| |||| Sbjct 117105420 ACTGCTTTCATTGAGATTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCA 117105361 Query 79682 ATTGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 117105360 TCTGAGCTATGAAAGCA 117105344 Score = 89.7 bits (98), Expect = 6e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 74762 ATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCC 74821 |||| | || || |||| |||||| || ||||| |||| | || ||||| | || Sbjct 39549720 ATGCAAACCCTCGTCTCGCGATATCAACTCGTTCGAGAACGTTAAACCCGGCATCAACCC 39549779 Query 74822 ACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACA 74881 ||||||||||||||| || || ||||| ||| |||| ||||| || ||||| ||||| Sbjct 39549780 ACGCTTCTTCAACCAGAAAATAGCACAAAAGCTACCAGAAAAGAATATTCCTTCAACACA 39549839 Query 74882 CGCAAAGGC 74890 |||||||| Sbjct 39549840 GGCAAAGGC 39549848 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| || || |||| ||||||||||||||||||||||||||| ||||| Sbjct 117104085 TGCTTTCATTGAGATTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 117104026 Query 79684 TGAGCTACGAAAGCAA 79699 ||||||| |||||||| Sbjct 117104025 TGAGCTATGAAAGCAA 117104010 Score = 87.8 bits (96), Expect = 2e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681 ||||||||| |||| | || |||| ||||||||||||||||||||||||||| |||| Sbjct 117096738 ACTGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCA 117096679 Query 79682 ATTGAGCTACGAAAGCAA 79699 | ||||||| |||||||| Sbjct 117096678 ACTGAGCTATGAAAGCAA 117096661 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 117095140 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 117095081 Query 79684 TGAGCTACGAAAGCAA 79699 ||||||| |||||||| Sbjct 117095080 TGAGCTATGAAAGCAA 117095065 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| || || |||| ||||||||||||||||||||||||||| |||| Sbjct 117100421 TGCTTTCATTGAGATTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCATC 117100362 Query 79684 TGAGCTACGAAAGCAA 79699 ||||||| |||||||| Sbjct 117100361 TGAGCTATGAAAGCAA 117100346 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 117104333 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 117104274 Query 79684 TGAGCTACGAAAGCAA 79699 ||||||| |||||||| Sbjct 117104273 TGAGCTATGAAAGCAA 117104258 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 117105687 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 117105628 Query 79684 TGAGCTACGAAAGCAA 79699 ||||||| |||||||| Sbjct 117105627 TGAGCTATGAAAGCAA 117105612 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| || || |||| ||||||||||||||||||||||||||| |||| Sbjct 117113565 TGCTTTCATTGAGATTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCATC 117113506 Query 79684 TGAGCTACGAAAGCAA 79699 ||||||| |||||||| Sbjct 117113505 TGAGCTATGAAAGCAA 117113490 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 117113832 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 117113773 Query 79684 TGAGCTACGAAAGCAA 79699 ||||||| |||||||| Sbjct 117113772 TGAGCTATGAAAGCAA 117113757 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 117115780 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 117115721 Query 79684 TGAGCTACGAAAGCAA 79699 ||||||| |||||||| Sbjct 117115720 TGAGCTATGAAAGCAA 117115705 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 117100810 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 117100751 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 117100750 TGAGCTATGAAAGCA 117100736 >seq12 Length=166489593 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681 ||||||||| |||| ||||| |||| ||||||||||||||||||||||||||| |||| Sbjct 15101055 ACTGCTTTCATTGAGATTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCA 15101114 Query 79682 ATTGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 15101115 TCTGAGCTATGAAAGC 15101130 Score = 87.8 bits (96), Expect = 2e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| || || |||| ||||||||||||||||||||||||||| |||| Sbjct 15100519 TGCTTTCATTGAGATTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCATC 15100578 Query 79684 TGAGCTACGAAAGCAAAA 79701 ||||||| |||||||||| Sbjct 15100579 TGAGCTATGAAAGCAAAA 15100596 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 4509209 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 4509268 Query 79684 TGAGCTACGAAAGCAA 79699 ||||||| |||||||| Sbjct 4509269 TGAGCTATGAAAGCAA 4509284 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 15098429 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 15098488 Query 79684 TGAGCTACGAAAGCAA 79699 ||||||| |||||||| Sbjct 15098489 TGAGCTATGAAAGCAA 15098504 >seq14 Length=174509413 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681 |||||| ||| |||| | || |||| ||||||||||||||||||||||||||| |||| Sbjct 123128703 ACTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCA 123128762 Query 79682 ATTGAGCTACGAAAGC 79697 | |||||||||| ||| Sbjct 123128763 ACTGAGCTACGAGAGC 123128778 >seq16 Length=188620566 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 19325133 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 19325074 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 19325073 TGAGCTATGAAAGCA 19325059 >seq5 Length=219053782 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 178698738 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 178698797 Query 79684 TGAGCTACGAAAGCAAA 79700 ||||||| |||||| || Sbjct 178698798 TGAGCTATGAAAGCGAA 178698814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547205548174400